Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Gm40652-201ENSMUST00000218944 895 ntTSL 5 BASIC14.26□□□□□ -0.13
Col3a1P08121 Crygs-201ENSMUST00000040592 708 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col3a1P08121 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col3a1P08121 Git2-202ENSMUST00000086564 2984 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
Col3a1P08121 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col3a1P08121 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col3a1P08121 Zfp365-201ENSMUST00000064656 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col3a1P08121 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col3a1P08121 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
Col3a1P08121 Gm19692-201ENSMUST00000203856 2084 ntBASIC14.26□□□□□ -0.13
Col3a1P08121 Edc4-201ENSMUST00000040254 4780 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col3a1P08121 Cxcr5-204ENSMUST00000215293 2846 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col3a1P08121 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col3a1P08121 Zyg11a-203ENSMUST00000223127 2283 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Col3a1P08121 Gm42480-201ENSMUST00000198434 2595 ntBASIC14.26□□□□□ -0.13
Col3a1P08121 Gnrhr-202ENSMUST00000094654 1475 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Col3a1P08121 Cd33-202ENSMUST00000039861 1791 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col3a1P08121 Rbm48-201ENSMUST00000042753 2368 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Col3a1P08121 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC14.25□□□□□ -0.13
Col3a1P08121 Olfr22-ps1-201ENSMUST00000115991 1237 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Col3a1P08121 Gm11960-201ENSMUST00000122068 925 ntBASIC14.25□□□□□ -0.13
Col3a1P08121 Rn7s6-201ENSMUST00000175005 291 ntBASIC14.25□□□□□ -0.13
Col3a1P08121 Spdye4c-203ENSMUST00000178601 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 Gm9645-201ENSMUST00000197131 792 ntBASIC14.25□□□□□ -0.13
Col3a1P08121 Gm44329-201ENSMUST00000197469 112 ntBASIC14.25□□□□□ -0.13
Col3a1P08121 AC027700.1-201ENSMUST00000213965 370 ntTSL 5 BASIC14.25□□□□□ -0.13
Col3a1P08121 AC115122.1-201ENSMUST00000224850 1040 ntBASIC14.25□□□□□ -0.13
Col3a1P08121 AC164437.3-201ENSMUST00000228323 347 ntBASIC14.25□□□□□ -0.13
Col3a1P08121 Ccdc28b-201ENSMUST00000030586 879 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Col3a1P08121 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 AC138329.2-201ENSMUST00000225579 1842 ntBASIC14.25□□□□□ -0.13
Col3a1P08121 Ppara-202ENSMUST00000109422 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 Sun2-202ENSMUST00000089311 3709 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 Nphs1os-201ENSMUST00000152625 1339 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 Sntb1-201ENSMUST00000039769 4919 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 Rps9-203ENSMUST00000108624 478 ntTSL 5 BASIC14.25□□□□□ -0.13
Col3a1P08121 Prss46-201ENSMUST00000119427 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Col3a1P08121 Rsph14-206ENSMUST00000166088 1203 ntAPPRIS P4 TSL 5 BASIC14.25□□□□□ -0.13
Col3a1P08121 Prss46-202ENSMUST00000176403 1257 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 Rsph14-207ENSMUST00000179546 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 Gm8492-201ENSMUST00000182375 987 ntBASIC14.25□□□□□ -0.13
Col3a1P08121 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC14.25□□□□□ -0.13
Col3a1P08121 Gm28388-201ENSMUST00000186262 437 ntBASIC14.25□□□□□ -0.13
Col3a1P08121 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC14.25□□□□□ -0.13
Col3a1P08121 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC14.25□□□□□ -0.13
Col3a1P08121 Gm34809-203ENSMUST00000222945 509 ntTSL 5 BASIC14.25□□□□□ -0.13
Col3a1P08121 Krtap19-9b-201ENSMUST00000077715 461 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Col3a1P08121 Rsph14-201ENSMUST00000009214 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 Zfp276-201ENSMUST00000001092 4071 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col3a1P08121 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Col3a1P08121 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
Col3a1P08121 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col3a1P08121 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col3a1P08121 Rbm33-201ENSMUST00000030920 3955 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Col3a1P08121 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Col3a1P08121 Zbtb4-202ENSMUST00000108639 7811 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col3a1P08121 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col3a1P08121 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col3a1P08121 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC14.24□□□□□ -0.13
Col3a1P08121 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col3a1P08121 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col3a1P08121 Olfr269-ps1-201ENSMUST00000120783 302 ntBASIC14.24□□□□□ -0.13
Col3a1P08121 Gm11244-201ENSMUST00000121243 237 ntBASIC14.24□□□□□ -0.13
Col3a1P08121 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col3a1P08121 Mir1956-201ENSMUST00000157748 65 ntBASIC14.24□□□□□ -0.13
Col3a1P08121 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Col3a1P08121 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC14.24□□□□□ -0.13
Col3a1P08121 Gpx1-204ENSMUST00000193987 653 ntTSL 3 BASIC14.24□□□□□ -0.13
Col3a1P08121 Gm37981-201ENSMUST00000194280 535 ntBASIC14.24□□□□□ -0.13
Col3a1P08121 Gm43852-201ENSMUST00000202098 917 ntBASIC14.24□□□□□ -0.13
Col3a1P08121 Gm45460-201ENSMUST00000211385 1038 ntTSL 5 BASIC14.24□□□□□ -0.13
Col3a1P08121 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col3a1P08121 Wnt3-201ENSMUST00000000127 3076 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col3a1P08121 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Col3a1P08121 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Col3a1P08121 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col3a1P08121 Gm17213-201ENSMUST00000165161 1360 ntBASIC14.24□□□□□ -0.13
Col3a1P08121 Drd1-201ENSMUST00000021932 3526 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col3a1P08121 Usp2-201ENSMUST00000034508 3867 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Col3a1P08121 Unc45a-201ENSMUST00000032748 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col3a1P08121 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col3a1P08121 Col6a2-202ENSMUST00000105413 4653 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col3a1P08121 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC14.23□□□□□ -0.13
Col3a1P08121 Pdcd4-202ENSMUST00000074371 2418 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col3a1P08121 Snhg18-201ENSMUST00000181536 1486 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col3a1P08121 Gm37165-201ENSMUST00000193815 1463 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col3a1P08121 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Col3a1P08121 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms