Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Bod1l-204ENSMUST00000202908 10399 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Map1b-203ENSMUST00000223725 2669 ntBASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Gm14726-201ENSMUST00000120623 896 ntBASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Gm26956-201ENSMUST00000182176 986 ntBASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Gm9022-201ENSMUST00000182482 992 ntBASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Gm30285-201ENSMUST00000214614 422 ntBASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Rps3a1-201ENSMUST00000029722 977 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Tnfrsf4-201ENSMUST00000030952 1030 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Gm3402-201ENSMUST00000036715 981 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Oas1f-201ENSMUST00000057814 1480 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Gm5053-201ENSMUST00000208361 1678 ntBASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Gm6157-201ENSMUST00000199935 1897 ntBASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Gm10419-202ENSMUST00000196693 2530 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Cisd2-201ENSMUST00000029815 3361 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Numa1-201ENSMUST00000084852 7180 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
Trim3Q9R1R2 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Stat5b-202ENSMUST00000107358 5213 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Gm4735-201ENSMUST00000138679 1302 ntBASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Gm5855-201ENSMUST00000200240 1305 ntBASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Pnpla6-202ENSMUST00000111070 4496 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Gm25214-201ENSMUST00000104573 129 ntBASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Gm13315-201ENSMUST00000120376 991 ntBASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Gm14381-201ENSMUST00000122105 414 ntBASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Gm45692-201ENSMUST00000131138 557 ntAPPRIS P1 TSL 5 BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Gm9257-201ENSMUST00000221254 232 ntBASIC11.41□□□□□ -0.58
Trim3Q9R1R2 AC122371.3-201ENSMUST00000223402 1061 ntBASIC11.41□□□□□ -0.58
Trim3Q9R1R2 AC166095.1-201ENSMUST00000223731 1241 ntBASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Evi5l-208ENSMUST00000176825 3728 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC11.41□□□□□ -0.58
Trim3Q9R1R2 C230014O12Rik-201ENSMUST00000134921 2668 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 C530008M17Rik-203ENSMUST00000120818 1378 ntTSL 1 (best) BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Gm43075-201ENSMUST00000198613 3905 ntBASIC11.41□□□□□ -0.58
Trim3Q9R1R2 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim3Q9R1R2 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim3Q9R1R2 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim3Q9R1R2 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim3Q9R1R2 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim3Q9R1R2 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim3Q9R1R2 Dio1-201ENSMUST00000082426 1690 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim3Q9R1R2 Plekhn1-202ENSMUST00000105571 2004 ntTSL 5 BASIC11.4□□□□□ -0.58
Trim3Q9R1R2 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Trim3Q9R1R2 Clpx-201ENSMUST00000015501 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim3Q9R1R2 Pparg-204ENSMUST00000203732 1826 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim3Q9R1R2 Cdnf-201ENSMUST00000036350 3013 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim3Q9R1R2 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC11.4□□□□□ -0.58
Trim3Q9R1R2 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Trim3Q9R1R2 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim3Q9R1R2 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC11.4□□□□□ -0.58
Trim3Q9R1R2 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC11.4□□□□□ -0.58
Trim3Q9R1R2 Gm42420-201ENSMUST00000126621 634 ntAPPRIS P1 TSL 3 BASIC11.4□□□□□ -0.58
Trim3Q9R1R2 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC11.4□□□□□ -0.58
Trim3Q9R1R2 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.58
Trim3Q9R1R2 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC11.4□□□□□ -0.58
Trim3Q9R1R2 1700045I11Rik-201ENSMUST00000194752 493 ntBASIC11.4□□□□□ -0.58
Trim3Q9R1R2 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Trim3Q9R1R2 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 67.9 ms