Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Arfgap2-201ENSMUST00000028691 2791 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Zfp941-201ENSMUST00000080651 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Meltf-201ENSMUST00000023464 4133 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Gm13226-201ENSMUST00000117838 404 ntBASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Gm13829-201ENSMUST00000119600 138 ntBASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Gm14660-201ENSMUST00000119809 575 ntBASIC11.94□□□□□ -0.5
Lima1Q9ERG0 4933427G23Rik-202ENSMUST00000126393 544 ntBASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Rmrp-201ENSMUST00000157463 271 ntBASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC11.94□□□□□ -0.5
Lima1Q9ERG0 4930524O07Rik-201ENSMUST00000161822 1050 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Gm4034-201ENSMUST00000187674 480 ntBASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Gm45784-201ENSMUST00000188360 142 ntBASIC11.94□□□□□ -0.5
Lima1Q9ERG0 AL732506.1-201ENSMUST00000226420 281 ntBASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Gm24136-201ENSMUST00000083374 165 ntBASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Usp24-201ENSMUST00000094933 10575 ntAPPRIS P2 TSL 5 BASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC11.94□□□□□ -0.5
Lima1Q9ERG0 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Gm38055-201ENSMUST00000195353 2217 ntBASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Gm45053-201ENSMUST00000206112 2499 ntBASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Fam110b-201ENSMUST00000054857 3210 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Fbn1-202ENSMUST00000103234 11971 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Gm8228-201ENSMUST00000189949 2192 ntBASIC11.94□□□□□ -0.5
Lima1Q9ERG0 Sdc1-201ENSMUST00000020911 3157 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Smc3-201ENSMUST00000025930 4851 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Miga2-201ENSMUST00000077977 3381 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Trim11-202ENSMUST00000108809 3522 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 H2-M2-201ENSMUST00000016427 1550 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Tcirg1-204ENSMUST00000126070 3041 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Cdc14a-201ENSMUST00000090464 4485 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Gm33677-201ENSMUST00000220074 2765 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Nefm-202ENSMUST00000111089 3680 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Fam107b-201ENSMUST00000027965 3156 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Fam172a-201ENSMUST00000091459 3892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Arl5c-202ENSMUST00000107563 823 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Gm15824-201ENSMUST00000119516 955 ntBASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Gm11591-201ENSMUST00000120063 702 ntBASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Igfbp2-202ENSMUST00000120564 991 ntTSL 3 BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Gm9022-201ENSMUST00000182482 992 ntBASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Gm45338-203ENSMUST00000210371 1009 ntTSL 5 BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Treml1-201ENSMUST00000024792 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Chchd1-201ENSMUST00000071215 616 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Gm43321-201ENSMUST00000198897 2409 ntBASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Adamts5-201ENSMUST00000023611 8091 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Mindy1-201ENSMUST00000039537 2800 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Meaf6-205ENSMUST00000154689 4550 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Hnrnph2-205ENSMUST00000113203 2315 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Osgepl1-201ENSMUST00000027265 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Herpud1-201ENSMUST00000034220 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Susd5-201ENSMUST00000135338 4083 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Pcdh12-203ENSMUST00000194012 2702 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Nefl-201ENSMUST00000022639 3380 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Rspo2-201ENSMUST00000063492 3338 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
Lima1Q9ERG0 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Drg2-201ENSMUST00000018568 1788 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Tas1r2-201ENSMUST00000030510 3047 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 4930488L21Rik-201ENSMUST00000181864 3244 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 A930038B10Rik-202ENSMUST00000181044 3415 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Gm45677-201ENSMUST00000209975 1341 ntBASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Lima1Q9ERG0 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC11.92□□□□□ -0.5
Retrieved 100 of 76,532 protein–RNA pairs in 50.4 ms