Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Uhrf1bp1-201ENSMUST00000114849 8584 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Mir680-2-201ENSMUST00000102163 110 ntBASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Gm23251-201ENSMUST00000103773 110 ntBASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Gm11511-201ENSMUST00000118146 540 ntBASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Gm15432-201ENSMUST00000121106 195 ntBASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Smim5-203ENSMUST00000152171 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Gnpda2-207ENSMUST00000173927 1011 ntAPPRIS ALT1 TSL 5 BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Gm3332-201ENSMUST00000189337 928 ntBASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Gm44711-201ENSMUST00000205414 1264 ntBASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Gm44882-201ENSMUST00000205702 802 ntBASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 AC159819.2-201ENSMUST00000216151 342 ntBASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Gm1821-202ENSMUST00000227415 750 ntBASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Rbfox2-202ENSMUST00000111581 3072 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Cul9-201ENSMUST00000066026 7818 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 AC171277.1-201ENSMUST00000216902 1441 ntBASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Wnt7b-201ENSMUST00000023015 3371 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 AC154671.1-201ENSMUST00000228617 1578 ntBASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Efna1-202ENSMUST00000118587 1632 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Lyar-202ENSMUST00000114106 1504 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Eya1-201ENSMUST00000027066 4347 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Pak1-201ENSMUST00000033040 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Gm12165-201ENSMUST00000117047 342 ntBASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Gm6506-201ENSMUST00000119775 1136 ntBASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Gm23085-201ENSMUST00000157849 293 ntBASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 1700119H24Rik-201ENSMUST00000187558 588 ntTSL 5 BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Gm4607-201ENSMUST00000206649 577 ntBASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Matn2-203ENSMUST00000226766 3252 ntBASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Sf3b1Q99NB9 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Gm12915-201ENSMUST00000131381 1499 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Smg7-203ENSMUST00000111836 3928 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Tcf12-218ENSMUST00000184783 3489 ntAPPRIS P3 TSL 5 BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 5330439B14Rik-201ENSMUST00000194811 1392 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Gm26286-201ENSMUST00000104166 134 ntBASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Gm24891-201ENSMUST00000104391 136 ntBASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Gm7851-201ENSMUST00000117574 323 ntBASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Gm53-203ENSMUST00000143887 757 ntTSL 3 BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Gm42629-201ENSMUST00000199063 1102 ntBASIC12.84□□□□□ -0.35
Sf3b1Q99NB9 Gm8956-201ENSMUST00000203939 825 ntBASIC12.84□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms