Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Gm6189-201ENSMUST00000164487 2082 ntBASIC13.37□□□□□ -0.27
Ift88Q61371 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Ift88Q61371 Timm10b-202ENSMUST00000106780 671 ntAPPRIS P2 TSL 2 BASIC13.37□□□□□ -0.27
Ift88Q61371 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ift88Q61371 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Ift88Q61371 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC13.37□□□□□ -0.27
Ift88Q61371 Gm42693-201ENSMUST00000196779 631 ntBASIC13.37□□□□□ -0.27
Ift88Q61371 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Ift88Q61371 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Ift88Q61371 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Ift88Q61371 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ift88Q61371 Ubxn10-203ENSMUST00000105811 2926 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ift88Q61371 Gm37849-201ENSMUST00000194722 1881 ntBASIC13.37□□□□□ -0.27
Ift88Q61371 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Ift88Q61371 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ift88Q61371 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ift88Q61371 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Ift88Q61371 Slc6a16-201ENSMUST00000179310 2007 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Ift88Q61371 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Ift88Q61371 Lipo2-201ENSMUST00000147153 3562 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Ift88Q61371 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Ift88Q61371 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC13.36□□□□□ -0.27
Ift88Q61371 Tmem178b-201ENSMUST00000061740 3178 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC13.36□□□□□ -0.27
Ift88Q61371 Setd1a-201ENSMUST00000047075 6487 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Ift88Q61371 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Ift88Q61371 Pgbd5-203ENSMUST00000136892 1739 ntAPPRIS P2 TSL 5 BASIC13.36□□□□□ -0.27
Ift88Q61371 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Ift88Q61371 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Ift88Q61371 Frmd4a-202ENSMUST00000091497 6208 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 Gm12846-201ENSMUST00000120431 1373 ntBASIC13.36□□□□□ -0.27
Ift88Q61371 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC13.36□□□□□ -0.27
Ift88Q61371 Wdr26-208ENSMUST00000162963 6452 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Ift88Q61371 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC13.36□□□□□ -0.27
Ift88Q61371 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC13.36□□□□□ -0.27
Ift88Q61371 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 Spata3-209ENSMUST00000152501 743 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC13.36□□□□□ -0.27
Ift88Q61371 Gm9136-201ENSMUST00000193368 454 ntBASIC13.36□□□□□ -0.27
Ift88Q61371 Gm45437-201ENSMUST00000209998 448 ntTSL 3 BASIC13.36□□□□□ -0.27
Ift88Q61371 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC13.36□□□□□ -0.27
Ift88Q61371 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC13.36□□□□□ -0.27
Ift88Q61371 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC13.36□□□□□ -0.27
Ift88Q61371 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Ift88Q61371 Tpd52-204ENSMUST00000094381 1074 ntTSL 3 BASIC13.36□□□□□ -0.27
Ift88Q61371 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC13.36□□□□□ -0.27
Ift88Q61371 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC13.36□□□□□ -0.27
Ift88Q61371 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 9430038I01Rik-203ENSMUST00000120340 4643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 Hs6st2-202ENSMUST00000114871 4351 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 Morf4l2-204ENSMUST00000113097 1825 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Ift88Q61371 Gm29050-201ENSMUST00000190732 2528 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Ift88Q61371 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Pcdhga4-201ENSMUST00000194418 4727 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Galnt10-201ENSMUST00000066987 4715 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC13.35□□□□□ -0.27
Ift88Q61371 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Emp1-202ENSMUST00000111907 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC13.35□□□□□ -0.27
Ift88Q61371 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Gm13875-201ENSMUST00000120162 282 ntBASIC13.35□□□□□ -0.27
Ift88Q61371 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Gm18711-201ENSMUST00000199341 750 ntBASIC13.35□□□□□ -0.27
Ift88Q61371 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC13.35□□□□□ -0.27
Ift88Q61371 AC166095.1-201ENSMUST00000223731 1241 ntBASIC13.35□□□□□ -0.27
Ift88Q61371 Wdyhv1-206ENSMUST00000227142 786 ntBASIC13.35□□□□□ -0.27
Ift88Q61371 Mrto4-201ENSMUST00000030513 930 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Ift88Q61371 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC13.35□□□□□ -0.27
Ift88Q61371 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Synpo-202ENSMUST00000115318 4479 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Ift88Q61371 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms