Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Gm28882-201ENSMUST00000185504 314 ntBASIC13.36□□□□□ -0.27
Hmgb1P63158 Gm5370-201ENSMUST00000187187 574 ntBASIC13.36□□□□□ -0.27
Hmgb1P63158 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC13.36□□□□□ -0.27
Hmgb1P63158 Gm7619-201ENSMUST00000210649 1282 ntBASIC13.36□□□□□ -0.27
Hmgb1P63158 Gm9004-201ENSMUST00000218739 1222 ntBASIC13.36□□□□□ -0.27
Hmgb1P63158 CU024892.2-201ENSMUST00000224608 832 ntBASIC13.36□□□□□ -0.27
Hmgb1P63158 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Hmgb1P63158 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Hmgb1P63158 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb1P63158 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb1P63158 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb1P63158 Ces3b-201ENSMUST00000074403 1907 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb1P63158 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Hmgb1P63158 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb1P63158 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb1P63158 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb1P63158 Ppp3r1-201ENSMUST00000102880 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb1P63158 Gtf2i-210ENSMUST00000173341 4302 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb1P63158 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC13.36□□□□□ -0.27
Hmgb1P63158 Arhgef3-204ENSMUST00000225949 3198 ntBASIC13.36□□□□□ -0.27
Hmgb1P63158 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb1P63158 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb1P63158 Mon1b-202ENSMUST00000179926 3470 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Hmgb1P63158 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Hmgb1P63158 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Tnn-202ENSMUST00000131919 3987 ntTSL 5 BASIC13.35□□□□□ -0.27
Hmgb1P63158 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Hmgb1P63158 Gm8522-201ENSMUST00000118416 1929 ntBASIC13.35□□□□□ -0.27
Hmgb1P63158 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Hmgb1P63158 Gm35507-201ENSMUST00000197932 2761 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Mpv17l-201ENSMUST00000023360 3087 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Gm13875-201ENSMUST00000120162 282 ntBASIC13.35□□□□□ -0.27
Hmgb1P63158 Gm11658-201ENSMUST00000120913 1008 ntBASIC13.35□□□□□ -0.27
Hmgb1P63158 Snora78-201ENSMUST00000158630 128 ntBASIC13.35□□□□□ -0.27
Hmgb1P63158 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC13.35□□□□□ -0.27
Hmgb1P63158 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC13.35□□□□□ -0.27
Hmgb1P63158 Rab11b-ps2-201ENSMUST00000178377 657 ntBASIC13.35□□□□□ -0.27
Hmgb1P63158 Gm26952-201ENSMUST00000181996 409 ntTSL 3 BASIC13.35□□□□□ -0.27
Hmgb1P63158 Gm2467-201ENSMUST00000182266 1010 ntBASIC13.35□□□□□ -0.27
Hmgb1P63158 Gm6981-201ENSMUST00000182467 1008 ntBASIC13.35□□□□□ -0.27
Hmgb1P63158 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Gm17823-201ENSMUST00000217830 1006 ntBASIC13.35□□□□□ -0.27
Hmgb1P63158 AC130829.1-201ENSMUST00000221548 494 ntBASIC13.35□□□□□ -0.27
Hmgb1P63158 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Riiad1-201ENSMUST00000029785 630 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Olfr54-201ENSMUST00000072152 942 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Hmgb1P63158 Olfr1375-201ENSMUST00000073543 942 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Hmgb1P63158 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Hmgb1P63158 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC13.35□□□□□ -0.27
Hmgb1P63158 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Tex9-209ENSMUST00000184125 2794 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Adh6a-202ENSMUST00000106247 1341 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Gm45428-201ENSMUST00000209619 1789 ntBASIC13.35□□□□□ -0.27
Hmgb1P63158 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Hmgb1P63158 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb1P63158 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb1P63158 Ggt1-208ENSMUST00000134503 2140 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb1P63158 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb1P63158 Alg13-202ENSMUST00000070801 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb1P63158 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb1P63158 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb1P63158 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Hmgb1P63158 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC13.34□□□□□ -0.27
Hmgb1P63158 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb1P63158 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb1P63158 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb1P63158 Nfyc-204ENSMUST00000120779 2006 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Hmgb1P63158 Cd300lf-201ENSMUST00000051264 1864 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb1P63158 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb1P63158 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC13.34□□□□□ -0.27
Hmgb1P63158 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC13.34□□□□□ -0.27
Hmgb1P63158 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb1P63158 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Hmgb1P63158 Serf1-203ENSMUST00000132053 516 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb1P63158 Aamdc-210ENSMUST00000146605 642 ntTSL 3 BASIC13.34□□□□□ -0.27
Hmgb1P63158 Gm5597-201ENSMUST00000182353 1193 ntBASIC13.34□□□□□ -0.27
Hmgb1P63158 Gm2546-201ENSMUST00000182630 991 ntBASIC13.34□□□□□ -0.27
Hmgb1P63158 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC13.34□□□□□ -0.27
Hmgb1P63158 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC13.34□□□□□ -0.27
Hmgb1P63158 Asb1-206ENSMUST00000188879 1299 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb1P63158 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Hmgb1P63158 Krtap4-7-201ENSMUST00000055121 984 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 73.7 ms