Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Usp4P35123 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Usp4P35123 Zeb2-202ENSMUST00000068415 5624 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Usp4P35123 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Usp4P35123 AC124397.2-201ENSMUST00000225575 2215 ntBASIC12.69□□□□□ -0.38
Usp4P35123 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC12.69□□□□□ -0.38
Usp4P35123 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Usp4P35123 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Usp4P35123 Coro6-204ENSMUST00000102493 2804 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
Usp4P35123 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Usp4P35123 Fzr1-202ENSMUST00000118812 1215 ntTSL 5 BASIC12.69□□□□□ -0.38
Usp4P35123 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
Usp4P35123 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC12.69□□□□□ -0.38
Usp4P35123 Nme9-202ENSMUST00000163199 1196 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
Usp4P35123 Gm7584-201ENSMUST00000175829 940 ntBASIC12.69□□□□□ -0.38
Usp4P35123 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC12.69□□□□□ -0.38
Usp4P35123 Gm29396-201ENSMUST00000185659 716 ntBASIC12.69□□□□□ -0.38
Usp4P35123 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC12.69□□□□□ -0.38
Usp4P35123 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC12.69□□□□□ -0.38
Usp4P35123 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC12.69□□□□□ -0.38
Usp4P35123 Gm45930-201ENSMUST00000221330 292 ntBASIC12.69□□□□□ -0.38
Usp4P35123 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Usp4P35123 Otud6a-201ENSMUST00000060241 873 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Usp4P35123 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Usp4P35123 Asb3-202ENSMUST00000117883 2509 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Usp4P35123 Nrros-202ENSMUST00000115163 3559 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Usp4P35123 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC12.69□□□□□ -0.38
Usp4P35123 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC12.69□□□□□ -0.38
Usp4P35123 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Usp4P35123 Mpp4-204ENSMUST00000186477 1885 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Usp4P35123 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
Usp4P35123 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Usp4P35123 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Usp4P35123 Hoxc5-201ENSMUST00000001709 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Uqcc1-203ENSMUST00000109632 2313 ntTSL 5 BASIC12.68□□□□□ -0.38
Usp4P35123 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC12.68□□□□□ -0.38
Usp4P35123 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 AC093022.4-203ENSMUST00000228523 2657 ntBASIC12.68□□□□□ -0.38
Usp4P35123 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Dlx5-202ENSMUST00000142635 1324 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Oprm1-202ENSMUST00000052751 1334 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Oprm1-207ENSMUST00000092731 1332 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Adgrg5-201ENSMUST00000074570 2802 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Nipsnap3b-202ENSMUST00000107665 848 ntTSL 2 BASIC12.68□□□□□ -0.38
Usp4P35123 Gm15046-201ENSMUST00000130153 408 ntTSL 3 BASIC12.68□□□□□ -0.38
Usp4P35123 E130006D01Rik-203ENSMUST00000137398 906 ntTSL 2 BASIC12.68□□□□□ -0.38
Usp4P35123 Olfr284-202ENSMUST00000206647 966 ntBASIC12.68□□□□□ -0.38
Usp4P35123 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC12.68□□□□□ -0.38
Usp4P35123 Scoc-203ENSMUST00000212031 409 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC12.68□□□□□ -0.38
Usp4P35123 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC12.68□□□□□ -0.38
Usp4P35123 Cldnd2-201ENSMUST00000040227 664 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Olfr1346-201ENSMUST00000056144 1051 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Usp4P35123 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Usp4P35123 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Usp4P35123 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 A330093E20Rik-202ENSMUST00000184994 2327 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Gm9544-201ENSMUST00000223349 2482 ntBASIC12.68□□□□□ -0.38
Usp4P35123 Trim11-202ENSMUST00000108809 3522 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Nrg1-211ENSMUST00000208497 2096 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Gm21319-201ENSMUST00000164517 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Usp4P35123 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usp4P35123 Mfsd4b5-203ENSMUST00000164566 2372 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Usp4P35123 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Usp4P35123 Agpat3-205ENSMUST00000105390 3513 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Usp4P35123 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usp4P35123 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC12.67□□□□□ -0.38
Usp4P35123 C230014O12Rik-201ENSMUST00000134921 2668 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Usp4P35123 Kcnh6-202ENSMUST00000106903 2816 ntTSL 5 BASIC12.67□□□□□ -0.38
Usp4P35123 AC138329.2-201ENSMUST00000225579 1842 ntBASIC12.67□□□□□ -0.38
Usp4P35123 Gm36987-201ENSMUST00000194704 2979 ntBASIC12.67□□□□□ -0.38
Usp4P35123 Gucy2e-203ENSMUST00000108665 3645 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Usp4P35123 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usp4P35123 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
Usp4P35123 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usp4P35123 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usp4P35123 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usp4P35123 Pex11g-201ENSMUST00000004686 2870 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usp4P35123 Ndufs5-202ENSMUST00000106206 599 ntAPPRIS P1 TSL 3 BASIC12.67□□□□□ -0.38
Usp4P35123 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
Usp4P35123 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
Usp4P35123 Gm12201-201ENSMUST00000120657 1234 ntBASIC12.67□□□□□ -0.38
Usp4P35123 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC12.67□□□□□ -0.38
Usp4P35123 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
Usp4P35123 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC12.67□□□□□ -0.38
Usp4P35123 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 56.9 ms