Protein–RNA interactions for Protein: P31648

Slc6a1, Sodium- and chloride-dependent GABA transporter 1, mousemouse

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Slc6a1P31648 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Slc6a1P31648 Ngef-202ENSMUST00000068681 3109 ntAPPRIS P4 TSL 1 (best) BASIC10.43□□□□□ -0.74
Slc6a1P31648 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC10.43□□□□□ -0.74
Slc6a1P31648 Pex3-201ENSMUST00000019945 2129 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Slc6a1P31648 Fermt3-201ENSMUST00000040772 2587 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Slc6a1P31648 Plpbp-205ENSMUST00000209856 3954 ntTSL 1 (best) BASIC10.43□□□□□ -0.74
Slc6a1P31648 Rasgrp4-210ENSMUST00000203070 3008 ntTSL 5 BASIC10.43□□□□□ -0.74
Slc6a1P31648 Scpep1-201ENSMUST00000000287 2097 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Slc6a1P31648 Slc26a2-202ENSMUST00000146409 7814 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.74
Slc6a1P31648 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC10.43□□□□□ -0.74
Slc6a1P31648 Gm43931-201ENSMUST00000204817 2870 ntBASIC10.43□□□□□ -0.74
Slc6a1P31648 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Aldh16a1-206ENSMUST00000209963 3537 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.74
Slc6a1P31648 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Ift140-201ENSMUST00000024983 5489 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 BC067074-203ENSMUST00000136755 8274 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
Slc6a1P31648 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.74
Slc6a1P31648 Ptbp1-202ENSMUST00000095457 2598 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Nfe2-207ENSMUST00000134554 1761 ntAPPRIS P1 TSL 2 BASIC10.42□□□□□ -0.74
Slc6a1P31648 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Map4-203ENSMUST00000163979 3320 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Vasn-201ENSMUST00000038770 2829 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Dennd4c-202ENSMUST00000082026 7940 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.74
Slc6a1P31648 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Phactr1-201ENSMUST00000066928 2013 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Sord-201ENSMUST00000110551 2352 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Faap20-202ENSMUST00000105627 710 ntAPPRIS ALT2 TSL 2 BASIC10.42□□□□□ -0.74
Slc6a1P31648 Gm14921-201ENSMUST00000118643 908 ntBASIC10.42□□□□□ -0.74
Slc6a1P31648 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC10.42□□□□□ -0.74
Slc6a1P31648 Gm13612-201ENSMUST00000119276 390 ntBASIC10.42□□□□□ -0.74
Slc6a1P31648 Gm14064-201ENSMUST00000134833 727 ntTSL 3 BASIC10.42□□□□□ -0.74
Slc6a1P31648 Mb-202ENSMUST00000166179 1056 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Mb-203ENSMUST00000169226 1106 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Gm27839-201ENSMUST00000184242 106 ntBASIC10.42□□□□□ -0.74
Slc6a1P31648 1600017P15Rik-202ENSMUST00000193960 890 ntBASIC10.42□□□□□ -0.74
Slc6a1P31648 AY702102-202ENSMUST00000194651 1173 ntBASIC10.42□□□□□ -0.74
Slc6a1P31648 Coprs-202ENSMUST00000209371 601 ntTSL 3 BASIC10.42□□□□□ -0.74
Slc6a1P31648 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Rpsa-ps10-201ENSMUST00000057740 885 ntBASIC10.42□□□□□ -0.74
Slc6a1P31648 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC10.42□□□□□ -0.74
Slc6a1P31648 Atpif1-201ENSMUST00000067496 539 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
Slc6a1P31648 Fam173a-201ENSMUST00000072735 800 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Rnase2b-201ENSMUST00000075648 759 ntAPPRIS P1 BASIC10.42□□□□□ -0.74
Slc6a1P31648 Camkmt-201ENSMUST00000095188 972 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 C230024C17Rik-201ENSMUST00000190663 3337 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Sfrp4-203ENSMUST00000222464 4049 ntTSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC10.42□□□□□ -0.74
Slc6a1P31648 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC10.42□□□□□ -0.74
Slc6a1P31648 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC10.42□□□□□ -0.74
Slc6a1P31648 Kcnj5-201ENSMUST00000034533 4685 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Pla2g7-201ENSMUST00000024706 2097 ntAPPRIS P1 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC10.42□□□□□ -0.74
Slc6a1P31648 Gm19299-202ENSMUST00000215724 1435 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 Sptbn2-201ENSMUST00000008991 8251 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 4933431E20Rik-201ENSMUST00000131345 5407 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 Bbs1-201ENSMUST00000053506 5581 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 Topbp1-201ENSMUST00000035164 5224 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 Cnbp-209ENSMUST00000204890 1614 ntAPPRIS ALT1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 Bmp1-201ENSMUST00000022693 3684 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 Gaa-201ENSMUST00000026666 3363 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 Aar2-202ENSMUST00000109570 2766 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC10.41□□□□□ -0.74
Slc6a1P31648 H2-T24-201ENSMUST00000113760 2182 ntAPPRIS P1 TSL 2 BASIC10.41□□□□□ -0.74
Slc6a1P31648 Gmppb-202ENSMUST00000112295 2702 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 Gm6560-201ENSMUST00000198588 1591 ntBASIC10.41□□□□□ -0.74
Slc6a1P31648 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 Tmem135-202ENSMUST00000117852 2986 ntTSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 Trav4d-2-201ENSMUST00000120914 335 ntBASIC10.41□□□□□ -0.74
Slc6a1P31648 Gm13834-201ENSMUST00000123757 137 ntTSL 3 BASIC10.41□□□□□ -0.74
Slc6a1P31648 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC10.41□□□□□ -0.74
Slc6a1P31648 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC10.41□□□□□ -0.74
Slc6a1P31648 Gm16136-203ENSMUST00000162520 1121 ntTSL 2 BASIC10.41□□□□□ -0.74
Slc6a1P31648 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC10.41□□□□□ -0.74
Slc6a1P31648 Gm27847-201ENSMUST00000183711 107 ntBASIC10.41□□□□□ -0.74
Slc6a1P31648 Gm27375-201ENSMUST00000183799 107 ntBASIC10.41□□□□□ -0.74
Slc6a1P31648 Gm5276-201ENSMUST00000196683 1047 ntBASIC10.41□□□□□ -0.74
Slc6a1P31648 4930449I04Rik-201ENSMUST00000198191 1123 ntBASIC10.41□□□□□ -0.74
Slc6a1P31648 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC10.41□□□□□ -0.74
Slc6a1P31648 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC10.41□□□□□ -0.74
Slc6a1P31648 9230020A06Rik-204ENSMUST00000215201 1116 ntTSL 5 BASIC10.41□□□□□ -0.74
Slc6a1P31648 Fau-201ENSMUST00000043074 574 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.74
Slc6a1P31648 Rn7sk-201ENSMUST00000083103 331 ntBASIC10.41□□□□□ -0.74
Retrieved 100 of 76,532 protein–RNA pairs in 51 ms