Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 A530032D15Rik-201ENSMUST00000160792 1492 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col1a1P11087 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col1a1P11087 Nr3c1-203ENSMUST00000115567 6436 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col1a1P11087 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Col1a1P11087 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Col1a1P11087 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Col1a1P11087 Gm21358-201ENSMUST00000191645 1659 ntBASIC14.02□□□□□ -0.17
Col1a1P11087 Abcb6-201ENSMUST00000027396 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col1a1P11087 Acnat1-202ENSMUST00000107697 1446 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Col1a1P11087 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col1a1P11087 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col1a1P11087 Usp33-209ENSMUST00000197748 4183 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col1a1P11087 Nppa-201ENSMUST00000103230 865 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col1a1P11087 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Col1a1P11087 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Col1a1P11087 Gm15726-201ENSMUST00000144738 509 ntTSL 3 BASIC14.01□□□□□ -0.17
Col1a1P11087 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col1a1P11087 BC016548-202ENSMUST00000153797 805 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col1a1P11087 Gm8723-201ENSMUST00000166076 820 ntBASIC14.01□□□□□ -0.17
Col1a1P11087 Gm8701-201ENSMUST00000169259 874 ntBASIC14.01□□□□□ -0.17
Col1a1P11087 Trav13-4-dv7-202ENSMUST00000184905 264 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Col1a1P11087 Gm19587-201ENSMUST00000191395 545 ntBASIC14.01□□□□□ -0.17
Col1a1P11087 Mpv17-206ENSMUST00000201353 846 ntAPPRIS P3 TSL 3 BASIC14.01□□□□□ -0.17
Col1a1P11087 Cdipt-204ENSMUST00000206346 806 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col1a1P11087 Gm18204-201ENSMUST00000209835 793 ntBASIC14.01□□□□□ -0.17
Col1a1P11087 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC14.01□□□□□ -0.17
Col1a1P11087 Gm4811-201ENSMUST00000220879 1220 ntBASIC14.01□□□□□ -0.17
Col1a1P11087 AC113282.2-201ENSMUST00000224012 945 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Col1a1P11087 AC113282.3-201ENSMUST00000224757 942 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Col1a1P11087 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC14.01□□□□□ -0.17
Col1a1P11087 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col1a1P11087 Fam198a-202ENSMUST00000213773 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col1a1P11087 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col1a1P11087 Dnmt3b-208ENSMUST00000109772 4015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col1a1P11087 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Col1a1P11087 Glo1-201ENSMUST00000024823 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col1a1P11087 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC14.01□□□□□ -0.17
Col1a1P11087 Llph-201ENSMUST00000020444 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col1a1P11087 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Col1a1P11087 Gm37348-201ENSMUST00000193104 1789 ntBASIC14.01□□□□□ -0.17
Col1a1P11087 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col1a1P11087 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col1a1P11087 Ddx23-201ENSMUST00000003450 3187 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Col1a1P11087 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC14.01□□□□□ -0.17
Col1a1P11087 4930555B11Rik-201ENSMUST00000123210 1533 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col1a1P11087 AC130823.1-201ENSMUST00000228929 1549 ntBASIC14.01□□□□□ -0.17
Col1a1P11087 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col1a1P11087 Dido1-207ENSMUST00000130986 4898 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Col1a1P11087 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 Gm12766-201ENSMUST00000140298 1823 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 Tomm5-201ENSMUST00000107807 442 ntTSL 2 BASIC14□□□□□ -0.17
Col1a1P11087 0610010K14Rik-206ENSMUST00000108576 576 ntAPPRIS ALT1 TSL 2 BASIC14□□□□□ -0.17
Col1a1P11087 Gm13351-201ENSMUST00000118087 414 ntBASIC14□□□□□ -0.17
Col1a1P11087 Gm21987-201ENSMUST00000119704 456 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Col1a1P11087 Gm5257-201ENSMUST00000121823 790 ntBASIC14□□□□□ -0.17
Col1a1P11087 Rbm3os-201ENSMUST00000124018 839 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 Gm18201-201ENSMUST00000174735 875 ntBASIC14□□□□□ -0.17
Col1a1P11087 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC14□□□□□ -0.17
Col1a1P11087 Gm15469-201ENSMUST00000201750 961 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 Gm4065-202ENSMUST00000218911 986 ntTSL 3 BASIC14□□□□□ -0.17
Col1a1P11087 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 Olfr1339-201ENSMUST00000094832 948 ntAPPRIS P1 BASIC14□□□□□ -0.17
Col1a1P11087 Gm11470-201ENSMUST00000118868 1475 ntBASIC14□□□□□ -0.17
Col1a1P11087 4933406C10Rik-201ENSMUST00000180391 1451 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 Dis3l-203ENSMUST00000120760 3661 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 Mcmbp-201ENSMUST00000057557 4237 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 Itgb1-201ENSMUST00000090006 3815 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Col1a1P11087 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC14□□□□□ -0.17
Col1a1P11087 Gm24791-201ENSMUST00000104284 131 ntBASIC13.99□□□□□ -0.17
Col1a1P11087 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
Col1a1P11087 Gm14274-201ENSMUST00000117182 615 ntBASIC13.99□□□□□ -0.17
Col1a1P11087 AC238811.4-201ENSMUST00000178019 1246 ntBASIC13.99□□□□□ -0.17
Col1a1P11087 Gm21844-201ENSMUST00000178699 663 ntTSL 3 BASIC13.99□□□□□ -0.17
Col1a1P11087 AC238940.3-201ENSMUST00000178830 1246 ntBASIC13.99□□□□□ -0.17
Col1a1P11087 Fkbp6-204ENSMUST00000201791 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col1a1P11087 CT009527.1-201ENSMUST00000224205 339 ntBASIC13.99□□□□□ -0.17
Col1a1P11087 Mitd1-201ENSMUST00000027257 1231 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col1a1P11087 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col1a1P11087 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Col1a1P11087 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Col1a1P11087 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col1a1P11087 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col1a1P11087 Tubb4a-201ENSMUST00000071135 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col1a1P11087 Ddx31-201ENSMUST00000113853 3271 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col1a1P11087 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col1a1P11087 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Col1a1P11087 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC13.99□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 51.6 ms