Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Mansc1-201ENSMUST00000047443 2376 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Rlbp1-202ENSMUST00000179243 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Grm1-201ENSMUST00000044306 6930 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Tcf25-203ENSMUST00000211932 5002 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Fam78a-201ENSMUST00000056406 4107 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Bop1-201ENSMUST00000023217 2476 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Gm23270-201ENSMUST00000104055 131 ntBASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Gm2260-201ENSMUST00000184965 657 ntBASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Gm38317-201ENSMUST00000195564 343 ntBASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Lcn10-201ENSMUST00000058912 1106 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Tbx4-203ENSMUST00000108047 3153 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Dnajb6-201ENSMUST00000008733 2918 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Gm37660-201ENSMUST00000192754 1732 ntBASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Luc7l2-207ENSMUST00000161227 2405 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Ecd-201ENSMUST00000022344 3132 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 AC154262.2-202ENSMUST00000225158 1331 ntBASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Gipr-201ENSMUST00000094790 2856 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC13.61□□□□□ -0.23
Smc1aQ9CU62 Med1-202ENSMUST00000092735 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Cfap77-204ENSMUST00000189711 1759 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Rgs3-205ENSMUST00000107424 4084 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 AC154639.1-201ENSMUST00000224393 2849 ntBASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Slurp1-202ENSMUST00000190433 2859 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Gm11531-201ENSMUST00000117614 555 ntBASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Gm14130-201ENSMUST00000118417 987 ntBASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Arhgef2-206ENSMUST00000175779 3065 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Gm9678-201ENSMUST00000198979 1149 ntBASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Gm8099-201ENSMUST00000200510 742 ntBASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Gm44967-201ENSMUST00000207047 631 ntBASIC13.6□□□□□ -0.23
Smc1aQ9CU62 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Gm42067-201ENSMUST00000209642 647 ntTSL 2 BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 AC123857.2-201ENSMUST00000225756 1582 ntBASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Zfp263-201ENSMUST00000023176 3241 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Tmem50a-201ENSMUST00000030626 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Cyb5d1-201ENSMUST00000051620 753 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Map1b-203ENSMUST00000223725 2669 ntBASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 AC167669.2-201ENSMUST00000224417 1620 ntBASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Gm4366-201ENSMUST00000201488 1342 ntBASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Gm9333-201ENSMUST00000205452 1323 ntBASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Lats2-207ENSMUST00000173990 3834 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Fen1-202ENSMUST00000116542 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Wdr33-201ENSMUST00000025264 6206 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Smc1aQ9CU62 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Bbs4-201ENSMUST00000026265 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Lcor-201ENSMUST00000067795 4810 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Clpb-211ENSMUST00000209579 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Spert-202ENSMUST00000164082 1560 ntAPPRIS ALT2 TSL 2 BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Gm5597-201ENSMUST00000182353 1193 ntBASIC13.59□□□□□ -0.23
Smc1aQ9CU62 2810039B14Rik-206ENSMUST00000185040 1113 ntBASIC13.59□□□□□ -0.23
Smc1aQ9CU62 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC13.59□□□□□ -0.23
Smc1aQ9CU62 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC13.59□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms