Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Gm11531-201ENSMUST00000117614 555 ntBASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Gm12957-201ENSMUST00000117835 377 ntBASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Gm44793-201ENSMUST00000136923 582 ntTSL 2 BASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Timm10b-208ENSMUST00000151193 1083 ntTSL 2 BASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Gm29396-201ENSMUST00000185659 716 ntBASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC13.82□□□□□ -0.2
Trim11Q99PQ2 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Gm44711-201ENSMUST00000205414 1264 ntBASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Olfr12-201ENSMUST00000081274 1121 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Dcc-202ENSMUST00000114943 5219 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Plxdc1-201ENSMUST00000017561 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Tubb2a-ps2-201ENSMUST00000221547 1339 ntBASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Gm43174-201ENSMUST00000195914 2445 ntBASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Adh5-201ENSMUST00000005964 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Gm9200-201ENSMUST00000118513 1354 ntBASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Trim11Q99PQ2 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC13.82□□□□□ -0.2
Trim11Q99PQ2 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Trim11Q99PQ2 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Gm18626-201ENSMUST00000221512 1409 ntBASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 1500009C09Rik-201ENSMUST00000136948 1526 ntAPPRIS P5 TSL 3 BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Rprl1-201ENSMUST00000158050 327 ntBASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Gm43371-201ENSMUST00000202838 1031 ntBASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Fam168a-210ENSMUST00000216021 968 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 4933434E20Rik-202ENSMUST00000029552 1080 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Adck2-204ENSMUST00000140364 3542 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Gm8522-201ENSMUST00000118416 1929 ntBASIC13.81□□□□□ -0.2
Trim11Q99PQ2 A630075F10Rik-201ENSMUST00000180895 1913 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Hnrnpr-201ENSMUST00000084219 2647 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Gja8-201ENSMUST00000062944 6940 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 AI464131-201ENSMUST00000054920 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Srek1-201ENSMUST00000074616 3934 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
Trim11Q99PQ2 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Gm38569-201ENSMUST00000205476 2228 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Bmp2-201ENSMUST00000028836 3555 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Gm25214-201ENSMUST00000104573 129 ntBASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Vps25-204ENSMUST00000107280 876 ntTSL 2 BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Gm13323-201ENSMUST00000120245 1151 ntBASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Gm12953-201ENSMUST00000138426 751 ntTSL 2 BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Gm27572-201ENSMUST00000183702 255 ntBASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Gm18054-201ENSMUST00000207539 555 ntBASIC13.8□□□□□ -0.2
Trim11Q99PQ2 Galc-201ENSMUST00000021390 3832 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms