Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Gm17518-201ENSMUST00000181232 1346 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Gm43677-201ENSMUST00000198098 2378 ntBASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 St6galnac6-202ENSMUST00000081879 2345 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Cdkl2-204ENSMUST00000113143 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Sf3b1Q99NB9 Gm13408-201ENSMUST00000119822 798 ntBASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Gm13935-201ENSMUST00000121859 798 ntBASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Odf4-202ENSMUST00000125134 646 ntTSL 3 BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Gm9550-201ENSMUST00000161130 862 ntBASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Gm9555-201ENSMUST00000200908 583 ntBASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Gm807-202ENSMUST00000224929 408 ntBASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Gm6580-201ENSMUST00000117504 1357 ntBASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Gm18782-201ENSMUST00000209023 1399 ntBASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Terf2ip-201ENSMUST00000052138 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Myo6-204ENSMUST00000113268 7927 ntTSL 5 BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Gm37437-201ENSMUST00000194451 1937 ntBASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Sesn3-204ENSMUST00000208222 9125 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Chd7-201ENSMUST00000039267 9444 ntAPPRIS P1 TSL 5 BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Gm37391-201ENSMUST00000194891 2318 ntBASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Trim26-205ENSMUST00000130367 3187 ntAPPRIS P2 TSL 5 BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Zmym1-202ENSMUST00000106099 2982 ntAPPRIS ALT2 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Krtap20-2-201ENSMUST00000169954 528 ntAPPRIS P1 BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Gm4482-201ENSMUST00000200876 742 ntBASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Gm14267-206ENSMUST00000226870 1209 ntBASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Sf3b1Q99NB9 Nudt18-202ENSMUST00000228554 3619 ntBASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Gm44292-201ENSMUST00000205194 2364 ntBASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Gm13045-201ENSMUST00000119019 712 ntBASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Gm14662-201ENSMUST00000145552 734 ntTSL 3 BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Gm8343-201ENSMUST00000182705 994 ntBASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Smim22-207ENSMUST00000184439 382 ntAPPRIS P3 TSL 2 BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Gm19353-201ENSMUST00000184561 445 ntBASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Gm45118-201ENSMUST00000208928 825 ntBASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Ntng1-201ENSMUST00000051253 327 ntBASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 CT009757.3-201ENSMUST00000223367 2320 ntBASIC12.87□□□□□ -0.35
Sf3b1Q99NB9 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Gm2420-201ENSMUST00000119864 2149 ntBASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Hipk3-201ENSMUST00000028600 7454 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Sf3b1Q99NB9 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms