Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 AC158355.1-201ENSMUST00000215895 1705 ntBASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Gm44152-201ENSMUST00000205007 1691 ntBASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Mei4-201ENSMUST00000057067 2670 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Stard8-201ENSMUST00000036606 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Cplx2-201ENSMUST00000026985 4928 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Mllt6-201ENSMUST00000044730 7274 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 n-R5s64-201ENSMUST00000102019 119 ntBASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Gm22920-201ENSMUST00000102175 109 ntBASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Rps2-ps4-201ENSMUST00000121977 633 ntBASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Gm14965-201ENSMUST00000124118 565 ntTSL 2 BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Gm37707-201ENSMUST00000195309 325 ntTSL 3 BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Gm9463-201ENSMUST00000206707 601 ntBASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Gm2553-201ENSMUST00000215986 605 ntBASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Snora73b-201ENSMUST00000083419 205 ntBASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Tepp-201ENSMUST00000098480 660 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Ssh1-204ENSMUST00000159592 8436 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 Qrfp-201ENSMUST00000057407 2927 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Usp40Q8BWR4 4931440F15Rik-201ENSMUST00000104962 3274 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Gm29100-201ENSMUST00000187564 4410 ntBASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Evx1os-201ENSMUST00000125305 2916 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Gm22711-201ENSMUST00000116890 133 ntBASIC16.55■□□□□ 0.24
Usp40Q8BWR4 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 2310057J18Rik-204ENSMUST00000152363 1043 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Mocs2-203ENSMUST00000164737 745 ntTSL 3 BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Gm8365-201ENSMUST00000197334 648 ntBASIC16.55■□□□□ 0.24
Usp40Q8BWR4 4930447N08Rik-203ENSMUST00000198879 1157 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 3300002P13Rik-201ENSMUST00000204020 1092 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Gm31479-201ENSMUST00000209936 522 ntTSL 3 BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Mcee-201ENSMUST00000037205 828 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 St8sia3-201ENSMUST00000025477 6282 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Zc3h4-201ENSMUST00000098789 6039 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Samd7-201ENSMUST00000108262 3144 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Tmem2-202ENSMUST00000096194 6667 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Camta2-203ENSMUST00000108544 4632 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Usp40Q8BWR4 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Zfp319-201ENSMUST00000057717 7232 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Esyt3-201ENSMUST00000042158 4483 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Gm5380-201ENSMUST00000119296 2136 ntBASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Gm11949-201ENSMUST00000117640 372 ntBASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Ly6g6e-201ENSMUST00000013910 1142 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Gm45550-201ENSMUST00000209380 946 ntBASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Gm10752-201ENSMUST00000218348 729 ntBASIC16.54■□□□□ 0.24
Usp40Q8BWR4 AC134869.3-201ENSMUST00000225581 343 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Olfr323-201ENSMUST00000070804 972 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Usp40Q8BWR4 Gm26678-201ENSMUST00000181057 3025 ntTSL 5 BASIC16.54■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 62.7 ms