Protein–RNA interactions for Protein: Q78JW9

Ubfd1, Ubiquitin domain-containing protein UBFD1, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1Q78JW9 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC11.83□□□□□ -0.52
Ubfd1Q78JW9 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Ubfd1Q78JW9 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Ubfd1Q78JW9 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Ubfd1Q78JW9 Slc35e2-202ENSMUST00000105608 6291 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Ubfd1Q78JW9 Zfp961-202ENSMUST00000131237 2689 ntAPPRIS ALT2 TSL 3 BASIC11.83□□□□□ -0.52
Ubfd1Q78JW9 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC11.83□□□□□ -0.52
Ubfd1Q78JW9 Gm37513-201ENSMUST00000194830 2268 ntBASIC11.83□□□□□ -0.52
Ubfd1Q78JW9 Gm38378-201ENSMUST00000195153 2268 ntBASIC11.83□□□□□ -0.52
Ubfd1Q78JW9 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Cldn18-202ENSMUST00000112882 1750 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Gm6580-201ENSMUST00000117504 1357 ntBASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Api5-201ENSMUST00000028617 3736 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 F2-202ENSMUST00000111335 1969 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Gm14058-201ENSMUST00000116082 735 ntBASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Gm9062-201ENSMUST00000117712 727 ntBASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Gm11941-201ENSMUST00000119904 610 ntBASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Gm15610-201ENSMUST00000120584 195 ntBASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Gm23085-201ENSMUST00000157849 293 ntBASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Gm4482-201ENSMUST00000200876 742 ntBASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Gm10069-203ENSMUST00000204081 907 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Prss52-201ENSMUST00000022537 1064 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Gm5705-201ENSMUST00000066241 711 ntBASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Tex10-201ENSMUST00000030030 3102 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Nfya-212ENSMUST00000162460 3706 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Myo10-201ENSMUST00000022882 5880 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Bcl2l13-201ENSMUST00000009256 6925 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Arl14ep-201ENSMUST00000028536 3337 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Paupar-201ENSMUST00000194826 3482 ntBASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Chrnb2-201ENSMUST00000029562 6399 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Reep2-201ENSMUST00000043484 1926 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Ubfd1Q78JW9 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Pex5-204ENSMUST00000112531 3075 ntAPPRIS ALT1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Psd2-201ENSMUST00000115716 4607 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Pck2-205ENSMUST00000226352 2784 ntBASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Gm8038-201ENSMUST00000164674 2044 ntBASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Gm26616-202ENSMUST00000195676 3107 ntBASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Gm20554-201ENSMUST00000177421 2352 ntBASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Fmo1-201ENSMUST00000046049 2388 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Gm12857-201ENSMUST00000117678 592 ntBASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Gm14724-201ENSMUST00000118400 537 ntBASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Gm11660-201ENSMUST00000120955 412 ntBASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Gm28778-201ENSMUST00000190734 785 ntAPPRIS P1 TSL 3 BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Gm42997-202ENSMUST00000200321 985 ntBASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Gm44124-201ENSMUST00000204159 472 ntBASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Gm26841-201ENSMUST00000180725 1787 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 F630040K05Rik-202ENSMUST00000180558 2633 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Clpb-201ENSMUST00000001884 4627 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Ubfd1Q78JW9 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 71.9 ms