Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 B2m-201ENSMUST00000102476 860 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col11a1Q61245 Gm15197-201ENSMUST00000120526 478 ntBASIC13.3□□□□□ -0.28
Col11a1Q61245 Gm13707-201ENSMUST00000123663 600 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col11a1Q61245 Saxo2-202ENSMUST00000126478 430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col11a1Q61245 Gm14055-201ENSMUST00000130262 668 ntTSL 5 BASIC13.3□□□□□ -0.28
Col11a1Q61245 Gm15935-201ENSMUST00000141004 607 ntTSL 3 BASIC13.3□□□□□ -0.28
Col11a1Q61245 1700057H21Rik-202ENSMUST00000154530 506 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col11a1Q61245 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col11a1Q61245 Gm6606-201ENSMUST00000193613 947 ntBASIC13.3□□□□□ -0.28
Col11a1Q61245 Klhl26-203ENSMUST00000209415 2919 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col11a1Q61245 Acy1-209ENSMUST00000215395 1051 ntTSL 5 BASIC13.3□□□□□ -0.28
Col11a1Q61245 Akr1c18-201ENSMUST00000021635 1200 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col11a1Q61245 Gm9487-201ENSMUST00000216600 472 ntBASIC13.3□□□□□ -0.28
Col11a1Q61245 D730050B12Rik-201ENSMUST00000223149 585 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col11a1Q61245 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Col11a1Q61245 Gm37600-201ENSMUST00000193764 3292 ntBASIC13.3□□□□□ -0.28
Col11a1Q61245 Gm18210-201ENSMUST00000209001 1524 ntBASIC13.3□□□□□ -0.28
Col11a1Q61245 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC13.3□□□□□ -0.28
Col11a1Q61245 Ccdc89-201ENSMUST00000061391 2093 ntAPPRIS P1 BASIC13.3□□□□□ -0.28
Col11a1Q61245 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col11a1Q61245 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col11a1Q61245 Etv1-205ENSMUST00000160856 1474 ntTSL 5 BASIC13.3□□□□□ -0.28
Col11a1Q61245 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col11a1Q61245 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col11a1Q61245 Nectin4-202ENSMUST00000094325 3245 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col11a1Q61245 Kcnk16-202ENSMUST00000225596 2127 ntBASIC13.3□□□□□ -0.28
Col11a1Q61245 Sipa1-203ENSMUST00000164304 3614 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col11a1Q61245 Rassf5-201ENSMUST00000027688 3485 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Col11a1Q61245 Rab3c-202ENSMUST00000223922 2398 ntBASIC13.3□□□□□ -0.28
Col11a1Q61245 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Col11a1Q61245 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
Col11a1Q61245 Arid4b-202ENSMUST00000110533 3020 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Col11a1Q61245 6530401F13Rik-201ENSMUST00000166971 1090 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 4930578M01Rik-201ENSMUST00000180490 907 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Gm29019-202ENSMUST00000188623 564 ntTSL 2 BASIC13.29□□□□□ -0.28
Col11a1Q61245 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC13.29□□□□□ -0.28
Col11a1Q61245 Gm30731-201ENSMUST00000203909 825 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Selenos-204ENSMUST00000206044 911 ntTSL 3 BASIC13.29□□□□□ -0.28
Col11a1Q61245 Gm46224-201ENSMUST00000220221 1242 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Fam228a-203ENSMUST00000220978 861 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Col11a1Q61245 Adipoq-201ENSMUST00000023593 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Crygf-201ENSMUST00000027082 627 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC13.29□□□□□ -0.28
Col11a1Q61245 Gm5513-201ENSMUST00000072982 1218 ntBASIC13.29□□□□□ -0.28
Col11a1Q61245 Myl9-201ENSMUST00000088552 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Qrfpr-203ENSMUST00000197447 1690 ntTSL 5 BASIC13.29□□□□□ -0.28
Col11a1Q61245 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Col11a1Q61245 Sipa1l3-207ENSMUST00000182484 2420 ntTSL 5 BASIC13.29□□□□□ -0.28
Col11a1Q61245 Tmem25-201ENSMUST00000002100 2448 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
Col11a1Q61245 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Hvcn1-201ENSMUST00000072602 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC13.29□□□□□ -0.28
Col11a1Q61245 Fbrs-207ENSMUST00000206394 2961 ntAPPRIS ALT2 TSL 5 BASIC13.29□□□□□ -0.28
Col11a1Q61245 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Gm5780-201ENSMUST00000217774 1834 ntBASIC13.29□□□□□ -0.28
Col11a1Q61245 Adra1a-206ENSMUST00000225182 2337 ntBASIC13.29□□□□□ -0.28
Col11a1Q61245 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Nipa2-204ENSMUST00000119201 3925 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Gm9754-201ENSMUST00000031305 3004 ntTSL 2 BASIC13.29□□□□□ -0.28
Col11a1Q61245 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Prkar1b-203ENSMUST00000110890 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Gpsm2-201ENSMUST00000029482 3498 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Gcg-201ENSMUST00000102733 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Tnfrsf14-201ENSMUST00000123514 1018 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 1110028F11Rik-201ENSMUST00000137077 837 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Gm11269-201ENSMUST00000157011 595 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Ddt-202ENSMUST00000172820 574 ntTSL 2 BASIC13.29□□□□□ -0.28
Col11a1Q61245 Mir7051-201ENSMUST00000184167 73 ntBASIC13.29□□□□□ -0.28
Col11a1Q61245 Gm44323-201ENSMUST00000198689 129 ntBASIC13.29□□□□□ -0.28
Col11a1Q61245 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC13.29□□□□□ -0.28
Col11a1Q61245 AC134869.4-202ENSMUST00000224350 837 ntBASIC13.29□□□□□ -0.28
Col11a1Q61245 Arhgef33-210ENSMUST00000225548 456 ntBASIC13.29□□□□□ -0.28
Col11a1Q61245 Olfr411-201ENSMUST00000080365 1049 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Col11a1Q61245 Zhx1-201ENSMUST00000070143 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC13.29□□□□□ -0.28
Col11a1Q61245 Popdc2-202ENSMUST00000114739 1992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Fhod3-201ENSMUST00000037097 5408 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Rnf34-201ENSMUST00000031434 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Ppp1r32-201ENSMUST00000038842 1458 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Pi4kb-201ENSMUST00000072287 3692 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Col11a1Q61245 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col11a1Q61245 Nrxn1-206ENSMUST00000160800 5683 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Col11a1Q61245 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Col11a1Q61245 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col11a1Q61245 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col11a1Q61245 Gart-201ENSMUST00000023684 3518 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col11a1Q61245 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Col11a1Q61245 Gm12247-201ENSMUST00000117585 670 ntBASIC13.28□□□□□ -0.28
Col11a1Q61245 Gm16459-201ENSMUST00000121443 686 ntBASIC13.28□□□□□ -0.28
Col11a1Q61245 Gm15982-201ENSMUST00000121681 554 ntBASIC13.28□□□□□ -0.28
Col11a1Q61245 Gm15911-201ENSMUST00000138992 809 ntTSL 3 BASIC13.28□□□□□ -0.28
Col11a1Q61245 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 40.3 ms