Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC11.06□□□□□ -0.64
Usf1Q61069 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Nt5dc2-206ENSMUST00000227794 1858 ntAPPRIS ALT2 BASIC11.06□□□□□ -0.64
Usf1Q61069 Nphs2-201ENSMUST00000027896 3116 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Polr3e-202ENSMUST00000106483 3001 ntAPPRIS P3 TSL 5 BASIC11.06□□□□□ -0.64
Usf1Q61069 Cyb5rl-202ENSMUST00000106756 1604 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 Bach2-201ENSMUST00000037416 3462 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Usf1Q61069 Arnt-201ENSMUST00000015666 2603 ntTSL 5 BASIC11.05□□□□□ -0.64
Usf1Q61069 Abo-201ENSMUST00000102900 1779 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 Dubr-204ENSMUST00000186944 2052 ntTSL 2 BASIC11.05□□□□□ -0.64
Usf1Q61069 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 Gm14703-201ENSMUST00000145894 1820 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Usf1Q61069 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 Gpnmb-203ENSMUST00000204260 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 Mettl14-201ENSMUST00000029759 2741 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC11.05□□□□□ -0.64
Usf1Q61069 Trim32-202ENSMUST00000107366 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 Krtap4-6-201ENSMUST00000100476 918 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Usf1Q61069 Akr1b10-202ENSMUST00000115051 1022 ntTSL 5 BASIC11.05□□□□□ -0.64
Usf1Q61069 Clec16a-205ENSMUST00000115827 2949 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 Gm13937-201ENSMUST00000121000 988 ntBASIC11.05□□□□□ -0.64
Usf1Q61069 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC11.05□□□□□ -0.64
Usf1Q61069 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 Nlrp5-ps-202ENSMUST00000173220 1294 ntBASIC11.05□□□□□ -0.64
Usf1Q61069 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
Usf1Q61069 Gm21092-201ENSMUST00000178995 955 ntBASIC11.05□□□□□ -0.64
Usf1Q61069 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC11.05□□□□□ -0.64
Usf1Q61069 Ighv5-11-201ENSMUST00000193354 371 ntBASIC11.05□□□□□ -0.64
Usf1Q61069 Gm44711-201ENSMUST00000205414 1264 ntBASIC11.05□□□□□ -0.64
Usf1Q61069 Gm45120-201ENSMUST00000208880 408 ntBASIC11.05□□□□□ -0.64
Usf1Q61069 1700012D14Rik-204ENSMUST00000210788 547 ntTSL 3 BASIC11.05□□□□□ -0.64
Usf1Q61069 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC11.05□□□□□ -0.64
Usf1Q61069 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC11.05□□□□□ -0.64
Usf1Q61069 Gm3285-201ENSMUST00000218443 908 ntAPPRIS P1 BASIC11.05□□□□□ -0.64
Usf1Q61069 CT025553.1-201ENSMUST00000226292 299 ntBASIC11.05□□□□□ -0.64
Usf1Q61069 Tmem168-201ENSMUST00000031554 4587 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 Gm5537-201ENSMUST00000091117 1252 ntBASIC11.05□□□□□ -0.64
Usf1Q61069 Pde4a-203ENSMUST00000115458 2962 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 Gm43677-201ENSMUST00000198098 2378 ntBASIC11.05□□□□□ -0.64
Usf1Q61069 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 Lmntd2-201ENSMUST00000026573 2095 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 Renbp-209ENSMUST00000155597 1310 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Usf1Q61069 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 Slc8b1-204ENSMUST00000111890 2775 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 Gm1661-203ENSMUST00000165128 1837 ntAPPRIS ALT2 TSL 5 BASIC11.05□□□□□ -0.64
Usf1Q61069 Laptm5-207ENSMUST00000151698 2600 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 Pak4-201ENSMUST00000032823 2611 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
Usf1Q61069 Nfatc4-201ENSMUST00000024179 3267 ntAPPRIS P3 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Mfsd14b-201ENSMUST00000054730 3251 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
Usf1Q61069 Eps8l1-214ENSMUST00000171445 2975 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Usf1Q61069 Gm14168-201ENSMUST00000144818 2197 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC11.04□□□□□ -0.64
Usf1Q61069 Sema3f-204ENSMUST00000192727 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Tmbim1-202ENSMUST00000113796 11011 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Plekhb1-204ENSMUST00000107045 1919 ntAPPRIS ALT1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Zscan29-205ENSMUST00000163766 3611 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Usf1Q61069 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Usf1Q61069 Gm8731-201ENSMUST00000118088 412 ntBASIC11.04□□□□□ -0.64
Usf1Q61069 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC11.04□□□□□ -0.64
Usf1Q61069 Gm13328-201ENSMUST00000120816 1020 ntBASIC11.04□□□□□ -0.64
Usf1Q61069 Gm11836-201ENSMUST00000121022 441 ntBASIC11.04□□□□□ -0.64
Usf1Q61069 Gm12164-201ENSMUST00000121695 551 ntBASIC11.04□□□□□ -0.64
Usf1Q61069 2810408I11Rik-201ENSMUST00000122813 435 ntTSL 2 BASIC11.04□□□□□ -0.64
Usf1Q61069 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC11.04□□□□□ -0.64
Usf1Q61069 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 E130307A14Rik-203ENSMUST00000136862 608 ntTSL 3 BASIC11.04□□□□□ -0.64
Usf1Q61069 4931406G06Rik-201ENSMUST00000147848 1252 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 A430105J06Rik-201ENSMUST00000180869 1275 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Gm10731-201ENSMUST00000181171 448 ntBASIC11.04□□□□□ -0.64
Usf1Q61069 Gm31166-202ENSMUST00000210638 1268 ntTSL 3 BASIC11.04□□□□□ -0.64
Usf1Q61069 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Gm19009-201ENSMUST00000223072 823 ntBASIC11.04□□□□□ -0.64
Usf1Q61069 Terb2-201ENSMUST00000028661 2115 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Gm5879-201ENSMUST00000089501 1209 ntBASIC11.04□□□□□ -0.64
Usf1Q61069 Fam219a-202ENSMUST00000108050 3321 ntTSL 5 BASIC11.04□□□□□ -0.64
Usf1Q61069 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Ubtf-203ENSMUST00000107115 3199 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
Usf1Q61069 Ccr7-201ENSMUST00000103134 1978 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
Usf1Q61069 Ubap2l-204ENSMUST00000195995 3516 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 83 ms