Protein–RNA interactions for Protein: Q3UDK1

Trafd1, TRAF-type zinc finger domain-containing protein 1, mousemouse

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trafd1Q3UDK1 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trafd1Q3UDK1 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trafd1Q3UDK1 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trafd1Q3UDK1 Ppp1r3b-204ENSMUST00000211648 4386 ntAPPRIS P1 TSL 3 BASIC12.09□□□□□ -0.47
Trafd1Q3UDK1 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Trafd1Q3UDK1 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trafd1Q3UDK1 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trafd1Q3UDK1 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trafd1Q3UDK1 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trafd1Q3UDK1 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trafd1Q3UDK1 Gng7-203ENSMUST00000117805 3382 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trafd1Q3UDK1 Prps1-201ENSMUST00000033809 1965 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Trafd1Q3UDK1 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
Trafd1Q3UDK1 Il21r-202ENSMUST00000206103 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.47
Trafd1Q3UDK1 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 AC093022.4-203ENSMUST00000228523 2657 ntBASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Slx4ip-201ENSMUST00000028737 2556 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Fam177a-201ENSMUST00000177768 3922 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Zscan29-201ENSMUST00000079024 2465 ntTSL 5 BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Gm24934-201ENSMUST00000103764 111 ntBASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Rhox2g-201ENSMUST00000115169 795 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Gm11793-201ENSMUST00000120433 981 ntBASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Rps2-ps9-201ENSMUST00000121414 817 ntBASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Gm13570-201ENSMUST00000140763 309 ntBASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Gm42937-201ENSMUST00000197360 752 ntBASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Mrap-201ENSMUST00000038197 1001 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Krtap19-2-201ENSMUST00000076186 605 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Olfr521-201ENSMUST00000098263 967 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Olfr1209-201ENSMUST00000099809 933 ntAPPRIS P1 BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Txndc5-204ENSMUST00000162075 2619 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Dsp-201ENSMUST00000124830 9592 ntAPPRIS P2 TSL 5 BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Olfr658-202ENSMUST00000210641 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Olfr658-201ENSMUST00000089296 2912 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Gm13142-201ENSMUST00000117213 1453 ntBASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Trafd1Q3UDK1 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Lipe-201ENSMUST00000003207 3613 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Gm26516-201ENSMUST00000180943 1397 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Gm29100-201ENSMUST00000187564 4410 ntBASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Kcnk2-206ENSMUST00000193319 1548 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Kctd10-202ENSMUST00000102581 3103 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Pcdhga11-201ENSMUST00000061279 4756 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Pla2g15-204ENSMUST00000212963 2578 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Ttc7-202ENSMUST00000125875 3917 ntTSL 2 BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Gm15172-201ENSMUST00000118945 1046 ntBASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Gm14999-201ENSMUST00000121039 624 ntBASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Pcp2-206ENSMUST00000144977 534 ntAPPRIS ALT2 TSL 3 BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Gm38241-201ENSMUST00000192641 898 ntBASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Gm43822-201ENSMUST00000200285 476 ntBASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 AC153929.1-201ENSMUST00000219009 303 ntBASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 CT009713.10-202ENSMUST00000225734 696 ntBASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Trpt1-201ENSMUST00000088223 1142 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Lgi4-201ENSMUST00000039775 4037 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 4833422C13Rik-202ENSMUST00000160385 2828 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Slc33a1-201ENSMUST00000029402 3150 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Cdc25a-204ENSMUST00000198308 2880 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Mroh7-201ENSMUST00000106770 4346 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Trafd1Q3UDK1 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC12.06□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms