Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 St6galnac5-201ENSMUST00000044278 5667 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Birc3-201ENSMUST00000013949 2667 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Psme2b-201ENSMUST00000104958 837 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Gm15236-201ENSMUST00000117309 379 ntBASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Gm8805-201ENSMUST00000117848 313 ntBASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Gm13123-201ENSMUST00000122173 492 ntBASIC11.8□□□□□ -0.52
Col28a1Q2UY11 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Rmrp-201ENSMUST00000157463 271 ntBASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Tmbim6-206ENSMUST00000161250 1148 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Prss51-202ENSMUST00000165710 953 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 6430590A07Rik-201ENSMUST00000181813 1032 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 CT485787.1-201ENSMUST00000225617 968 ntBASIC11.8□□□□□ -0.52
Col28a1Q2UY11 AL732506.1-201ENSMUST00000226420 281 ntBASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Rwdd3-201ENSMUST00000039761 1145 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 1110034G24Rik-202ENSMUST00000110132 1471 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Gm38157-201ENSMUST00000194178 1698 ntBASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Daxx-207ENSMUST00000174146 2424 ntAPPRIS P2 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Neurog3-201ENSMUST00000050103 1540 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Aldoc-202ENSMUST00000102478 1700 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 4921522P10Rik-201ENSMUST00000048606 2101 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 A430028G04Rik-201ENSMUST00000219095 1973 ntBASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Acsl6-202ENSMUST00000064690 1988 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Meaf6-205ENSMUST00000154689 4550 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Gpc5-203ENSMUST00000176912 2837 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 A830018L16Rik-202ENSMUST00000135014 6451 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Dbf4-204ENSMUST00000168500 2000 ntTSL 5 BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Ints6-202ENSMUST00000223585 10883 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Map4-205ENSMUST00000165876 5573 ntAPPRIS ALT2 TSL 5 BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Pitpnm2-201ENSMUST00000086123 6620 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Taf6-203ENSMUST00000110937 2093 ntTSL 5 BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Dnajb6-201ENSMUST00000008733 2918 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Prkar1a-201ENSMUST00000049527 3359 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Mapkapk5-205ENSMUST00000111786 975 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Gm13369-201ENSMUST00000119442 987 ntBASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Gm13342-201ENSMUST00000121055 207 ntBASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 U2af1l4-206ENSMUST00000163654 781 ntTSL 2 BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 U2af1l4-221ENSMUST00000167361 860 ntTSL 2 BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Gm44364-201ENSMUST00000198368 141 ntBASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Snhg8-203ENSMUST00000199645 528 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Gm34549-203ENSMUST00000208300 896 ntTSL 5 BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Msra-205ENSMUST00000210428 1180 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Fgf2-201ENSMUST00000038885 462 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Gm10268-201ENSMUST00000085340 555 ntBASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Mcf2l-203ENSMUST00000110866 5108 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Prpf8-201ENSMUST00000018449 7442 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Hs6st2-202ENSMUST00000114871 4351 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
Col28a1Q2UY11 4933431E20Rik-209ENSMUST00000146337 1636 ntTSL 5 BASIC11.78□□□□□ -0.52
Col28a1Q2UY11 4930429D17Rik-201ENSMUST00000198193 1624 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 55.5 ms