Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Oraov1-201ENSMUST00000033388 2015 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col6a1Q04857 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col6a1Q04857 Bcl2l2-201ENSMUST00000022806 3509 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col6a1Q04857 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
Col6a1Q04857 Stard5-202ENSMUST00000117410 2832 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Col6a1Q04857 Rpl9-204ENSMUST00000127874 2690 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Col6a1Q04857 Rabggtb-202ENSMUST00000167111 1418 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Col6a1Q04857 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col6a1Q04857 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC13.42□□□□□ -0.26
Col6a1Q04857 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC13.42□□□□□ -0.26
Col6a1Q04857 Ighv10-1-201ENSMUST00000103492 359 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
Col6a1Q04857 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC13.42□□□□□ -0.26
Col6a1Q04857 Gm12516-201ENSMUST00000120819 385 ntBASIC13.42□□□□□ -0.26
Col6a1Q04857 Gm8199-201ENSMUST00000121323 823 ntBASIC13.42□□□□□ -0.26
Col6a1Q04857 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC13.42□□□□□ -0.26
Col6a1Q04857 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC13.42□□□□□ -0.26
Col6a1Q04857 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Col6a1Q04857 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
Col6a1Q04857 Gm23771-201ENSMUST00000178702 110 ntBASIC13.42□□□□□ -0.26
Col6a1Q04857 Ighv1-48-201ENSMUST00000191795 294 ntBASIC13.42□□□□□ -0.26
Col6a1Q04857 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
Col6a1Q04857 Gm45909-201ENSMUST00000212413 1031 ntBASIC13.42□□□□□ -0.26
Col6a1Q04857 AC093022.5-201ENSMUST00000226841 1079 ntBASIC13.42□□□□□ -0.26
Col6a1Q04857 Ifnab-201ENSMUST00000071378 1058 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
Col6a1Q04857 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col6a1Q04857 Abhd18-202ENSMUST00000108078 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col6a1Q04857 Gm42416-201ENSMUST00000115661 2856 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
Col6a1Q04857 Vmn1r198-202ENSMUST00000226786 6195 ntAPPRIS P2 BASIC13.42□□□□□ -0.26
Col6a1Q04857 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Col6a1Q04857 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col6a1Q04857 Tars2-201ENSMUST00000029752 2400 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col6a1Q04857 Jmjd8-205ENSMUST00000133595 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col6a1Q04857 Arfip1-201ENSMUST00000098990 2799 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Col6a1Q04857 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col6a1Q04857 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col6a1Q04857 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Col6a1Q04857 Vwa8-201ENSMUST00000040990 7054 ntAPPRIS P2 TSL 5 BASIC13.42□□□□□ -0.26
Col6a1Q04857 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Col6a1Q04857 Scube2-201ENSMUST00000007423 3571 ntTSL 2 BASIC13.41□□□□□ -0.26
Col6a1Q04857 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC13.41□□□□□ -0.26
Col6a1Q04857 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
Col6a1Q04857 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 Slc14a2-202ENSMUST00000163367 1428 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 Dmbx1-201ENSMUST00000064806 5799 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 Ighv10-3-201ENSMUST00000103495 377 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Col6a1Q04857 Cisd3-201ENSMUST00000107583 737 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 Gm12628-201ENSMUST00000122193 382 ntBASIC13.41□□□□□ -0.26
Col6a1Q04857 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 Gm4726-201ENSMUST00000135604 736 ntBASIC13.41□□□□□ -0.26
Col6a1Q04857 Gm21982-201ENSMUST00000146232 3821 ntTSL 2 BASIC13.41□□□□□ -0.26
Col6a1Q04857 Gm6019-201ENSMUST00000148369 736 ntBASIC13.41□□□□□ -0.26
Col6a1Q04857 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 Cldn16-202ENSMUST00000161053 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 Park2-204ENSMUST00000179624 1108 ntTSL 5 BASIC13.41□□□□□ -0.26
Col6a1Q04857 Gm27530-201ENSMUST00000184096 98 ntBASIC13.41□□□□□ -0.26
Col6a1Q04857 2310074N15Rik-201ENSMUST00000198276 582 ntBASIC13.41□□□□□ -0.26
Col6a1Q04857 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 Gm45285-201ENSMUST00000210418 749 ntTSL 3 BASIC13.41□□□□□ -0.26
Col6a1Q04857 Gm45338-204ENSMUST00000210658 1105 ntTSL 5 BASIC13.41□□□□□ -0.26
Col6a1Q04857 Tbca-201ENSMUST00000046644 559 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 Gm5455-201ENSMUST00000058710 715 ntBASIC13.41□□□□□ -0.26
Col6a1Q04857 Lst1-201ENSMUST00000097336 415 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 Coa4-201ENSMUST00000054310 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 Tsku-206ENSMUST00000179780 2404 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 Rnft2-202ENSMUST00000121369 4431 ntAPPRIS ALT1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 Spata7-203ENSMUST00000101146 1913 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Col6a1Q04857 Grm2-201ENSMUST00000023959 4711 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Col6a1Q04857 Pitpnm2-204ENSMUST00000159677 1690 ntTSL 5 BASIC13.4□□□□□ -0.26
Col6a1Q04857 Chst15-201ENSMUST00000077472 5041 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col6a1Q04857 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col6a1Q04857 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Col6a1Q04857 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col6a1Q04857 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col6a1Q04857 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col6a1Q04857 Gm16564-201ENSMUST00000162545 3010 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Col6a1Q04857 Col22a1-202ENSMUST00000159993 8809 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Col6a1Q04857 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col6a1Q04857 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col6a1Q04857 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col6a1Q04857 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Col6a1Q04857 Smarcb1-202ENSMUST00000121304 1622 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col6a1Q04857 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Col6a1Q04857 Gm7049-201ENSMUST00000223520 1712 ntBASIC13.4□□□□□ -0.26
Col6a1Q04857 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
Col6a1Q04857 Gm13600-201ENSMUST00000117949 744 ntBASIC13.4□□□□□ -0.26
Col6a1Q04857 Vps25-205ENSMUST00000121331 790 ntTSL 2 BASIC13.4□□□□□ -0.26
Col6a1Q04857 E130307A14Rik-203ENSMUST00000136862 608 ntTSL 3 BASIC13.4□□□□□ -0.26
Col6a1Q04857 4631405J19Rik-204ENSMUST00000145926 936 ntTSL 3 BASIC13.4□□□□□ -0.26
Col6a1Q04857 Gm22442-201ENSMUST00000157256 144 ntBASIC13.4□□□□□ -0.26
Col6a1Q04857 Gm22144-201ENSMUST00000157402 102 ntBASIC13.4□□□□□ -0.26
Col6a1Q04857 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col6a1Q04857 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 64.3 ms