Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Itgb4-202ENSMUST00000068981 5584 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Shmt1P50431 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Shmt1P50431 Mypopos-202ENSMUST00000205975 2321 ntBASIC12.81□□□□□ -0.36
Shmt1P50431 Rpl36-ps10-201ENSMUST00000117431 216 ntBASIC12.81□□□□□ -0.36
Shmt1P50431 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC12.81□□□□□ -0.36
Shmt1P50431 Eef1akmt2-202ENSMUST00000120425 573 ntTSL 3 BASIC12.81□□□□□ -0.36
Shmt1P50431 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC12.81□□□□□ -0.36
Shmt1P50431 Gm6039-201ENSMUST00000121667 1250 ntBASIC12.81□□□□□ -0.36
Shmt1P50431 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Shmt1P50431 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC12.81□□□□□ -0.36
Shmt1P50431 Gm5706-201ENSMUST00000181525 993 ntBASIC12.81□□□□□ -0.36
Shmt1P50431 Rps13-ps2-201ENSMUST00000182017 453 ntBASIC12.81□□□□□ -0.36
Shmt1P50431 Agrp-201ENSMUST00000005849 661 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Shmt1P50431 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Shmt1P50431 AC126257.1-201ENSMUST00000213195 1536 ntBASIC12.81□□□□□ -0.36
Shmt1P50431 Gm10787-201ENSMUST00000099552 1548 ntTSL 2 BASIC12.81□□□□□ -0.36
Shmt1P50431 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Shmt1P50431 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Shmt1P50431 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Shmt1P50431 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Shmt1P50431 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Shmt1P50431 Fgd5-201ENSMUST00000089334 6095 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Shmt1P50431 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Shmt1P50431 Kif16b-201ENSMUST00000043589 6383 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
Shmt1P50431 Ppara-203ENSMUST00000109423 2519 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Shmt1P50431 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Shmt1P50431 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Shmt1P50431 Capn3-201ENSMUST00000028748 2606 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Shmt1P50431 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Shmt1P50431 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Shmt1P50431 Ptpn2-203ENSMUST00000122412 2667 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Shmt1P50431 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Shmt1P50431 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC12.8□□□□□ -0.36
Shmt1P50431 Gtse1-201ENSMUST00000170629 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Shmt1P50431 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Shmt1P50431 Gm28719-201ENSMUST00000187779 1757 ntBASIC12.8□□□□□ -0.36
Shmt1P50431 Gm7114-201ENSMUST00000190159 1789 ntBASIC12.8□□□□□ -0.36
Shmt1P50431 Zc3hc1-203ENSMUST00000115184 1504 ntTSL 5 BASIC12.8□□□□□ -0.36
Shmt1P50431 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Shmt1P50431 Fgf8-204ENSMUST00000111925 702 ntTSL 5 BASIC12.8□□□□□ -0.36
Shmt1P50431 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC12.8□□□□□ -0.36
Shmt1P50431 Gm12176-201ENSMUST00000121420 875 ntBASIC12.8□□□□□ -0.36
Shmt1P50431 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Shmt1P50431 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC12.8□□□□□ -0.36
Shmt1P50431 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC12.8□□□□□ -0.36
Shmt1P50431 Gm28071-201ENSMUST00000190355 478 ntBASIC12.8□□□□□ -0.36
Shmt1P50431 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
Shmt1P50431 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Shmt1P50431 Gm17827-201ENSMUST00000211825 742 ntBASIC12.8□□□□□ -0.36
Shmt1P50431 CT025694.1-201ENSMUST00000226188 934 ntBASIC12.8□□□□□ -0.36
Shmt1P50431 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Shmt1P50431 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Shmt1P50431 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC12.8□□□□□ -0.36
Shmt1P50431 Dag1-204ENSMUST00000191899 5662 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Shmt1P50431 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Shmt1P50431 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Shmt1P50431 Gm44414-201ENSMUST00000203660 2109 ntBASIC12.8□□□□□ -0.36
Shmt1P50431 Bend3-201ENSMUST00000040147 5882 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Shmt1P50431 Slc13a2-201ENSMUST00000001122 2412 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Shmt1P50431 4930534D22Rik-201ENSMUST00000181438 2715 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Shmt1P50431 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC12.8□□□□□ -0.36
Shmt1P50431 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Shmt1P50431 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Shmt1P50431 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Shmt1P50431 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC12.79□□□□□ -0.36
Shmt1P50431 Oxnad1-201ENSMUST00000022462 2376 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Shmt1P50431 Astl-201ENSMUST00000059839 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Shmt1P50431 Zbtb1-201ENSMUST00000042779 12190 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Shmt1P50431 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Shmt1P50431 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC12.79□□□□□ -0.36
Shmt1P50431 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Shmt1P50431 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Shmt1P50431 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC12.79□□□□□ -0.36
Shmt1P50431 Prkag3-206ENSMUST00000188073 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Shmt1P50431 Gm5847-201ENSMUST00000178959 1595 ntBASIC12.79□□□□□ -0.36
Shmt1P50431 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Shmt1P50431 Gm22902-201ENSMUST00000158488 302 ntBASIC12.79□□□□□ -0.36
Shmt1P50431 A430027H14Rik-202ENSMUST00000192797 618 ntTSL 2 BASIC12.79□□□□□ -0.36
Shmt1P50431 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
Shmt1P50431 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Shmt1P50431 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC12.79□□□□□ -0.36
Shmt1P50431 Pcdh19-202ENSMUST00000149154 10289 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Shmt1P50431 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Shmt1P50431 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Shmt1P50431 1700001L05Rik-201ENSMUST00000100370 2270 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Shmt1P50431 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Shmt1P50431 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Shmt1P50431 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Shmt1P50431 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Shmt1P50431 Ddx39b-202ENSMUST00000172549 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Shmt1P50431 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC12.79□□□□□ -0.36
Shmt1P50431 Vwf-201ENSMUST00000100941 1807 ntTSL 5 BASIC12.78□□□□□ -0.36
Shmt1P50431 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Shmt1P50431 Gm20700-201ENSMUST00000176749 2206 ntTSL 3 BASIC12.78□□□□□ -0.36
Shmt1P50431 Dpp8-201ENSMUST00000034960 4808 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Shmt1P50431 Mmab-201ENSMUST00000031560 3020 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Shmt1P50431 Map6-201ENSMUST00000068973 3430 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Shmt1P50431 D230017M19Rik-201ENSMUST00000180722 3096 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Shmt1P50431 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Shmt1P50431 Snph-202ENSMUST00000094456 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 46.9 ms