Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Cdx2P43241 Gm6408-201ENSMUST00000179032 1171 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Cdx2P43241 Gm3671-201ENSMUST00000182463 1007 ntBASIC11.51□□□□□ -0.57
Cdx2P43241 AC124457.1-201ENSMUST00000198845 120 ntBASIC11.51□□□□□ -0.57
Cdx2P43241 Gm42657-201ENSMUST00000201746 211 ntBASIC11.51□□□□□ -0.57
Cdx2P43241 Gm45441-202ENSMUST00000209301 1235 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Gm2875-201ENSMUST00000211333 360 ntBASIC11.51□□□□□ -0.57
Cdx2P43241 Gm18636-201ENSMUST00000218846 1066 ntBASIC11.51□□□□□ -0.57
Cdx2P43241 Gm6867-201ENSMUST00000219165 425 ntBASIC11.51□□□□□ -0.57
Cdx2P43241 AC166341.2-201ENSMUST00000220571 120 ntBASIC11.51□□□□□ -0.57
Cdx2P43241 Gm34809-203ENSMUST00000222945 509 ntTSL 5 BASIC11.51□□□□□ -0.57
Cdx2P43241 AC154257.1-202ENSMUST00000224729 843 ntBASIC11.51□□□□□ -0.57
Cdx2P43241 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Tbca-201ENSMUST00000046644 559 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Try10-201ENSMUST00000072103 860 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Snu13-202ENSMUST00000080622 1283 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Gm25517-201ENSMUST00000083865 134 ntBASIC11.51□□□□□ -0.57
Cdx2P43241 Lgals1-201ENSMUST00000089377 800 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Cnga3-203ENSMUST00000194195 2083 ntAPPRIS P3 TSL 5 BASIC11.51□□□□□ -0.57
Cdx2P43241 Ret-201ENSMUST00000032201 5456 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Sln-201ENSMUST00000048485 1318 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Apc2-202ENSMUST00000105359 9173 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Cdx2P43241 Il4ra-201ENSMUST00000033004 5256 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Gm6903-201ENSMUST00000160509 1366 ntBASIC11.51□□□□□ -0.57
Cdx2P43241 Atg16l1-202ENSMUST00000113186 3004 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Smad4-202ENSMUST00000114939 2233 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC11.51□□□□□ -0.57
Cdx2P43241 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC11.51□□□□□ -0.57
Cdx2P43241 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cdx2P43241 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Cdx2P43241 Npr1-201ENSMUST00000029540 4066 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx2P43241 Mroh1-204ENSMUST00000159218 5085 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Cdx2P43241 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx2P43241 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Cdx2P43241 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC11.5□□□□□ -0.57
Cdx2P43241 D430019H16Rik-201ENSMUST00000178224 5786 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx2P43241 Gm10681-202ENSMUST00000178221 1605 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Cdx2P43241 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx2P43241 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx2P43241 Elmsan1-201ENSMUST00000046266 6848 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx2P43241 Gm5380-201ENSMUST00000119296 2136 ntBASIC11.5□□□□□ -0.57
Cdx2P43241 Fam49b-201ENSMUST00000063838 3797 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx2P43241 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx2P43241 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC11.5□□□□□ -0.57
Cdx2P43241 Gm14199-201ENSMUST00000130021 495 ntTSL 2 BASIC11.5□□□□□ -0.57
Cdx2P43241 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC11.5□□□□□ -0.57
Cdx2P43241 Gm21092-201ENSMUST00000178995 955 ntBASIC11.5□□□□□ -0.57
Cdx2P43241 Gm28388-201ENSMUST00000186262 437 ntBASIC11.5□□□□□ -0.57
Cdx2P43241 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC11.5□□□□□ -0.57
Cdx2P43241 D8Ertd738e-201ENSMUST00000019506 616 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
Cdx2P43241 D3Ertd751e-215ENSMUST00000195882 680 ntAPPRIS P3 TSL 2 BASIC11.5□□□□□ -0.57
Cdx2P43241 Gm21221-201ENSMUST00000202876 1073 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx2P43241 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC11.5□□□□□ -0.57
Cdx2P43241 Pgpep1l-202ENSMUST00000207874 677 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Cdx2P43241 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx2P43241 AC122350.1-201ENSMUST00000228135 533 ntBASIC11.5□□□□□ -0.57
Cdx2P43241 Olfr284-201ENSMUST00000063289 918 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
Cdx2P43241 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx2P43241 Amtn-201ENSMUST00000073363 1022 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx2P43241 Jrk-201ENSMUST00000050234 5853 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx2P43241 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Cdx2P43241 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx2P43241 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx2P43241 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
Cdx2P43241 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx2P43241 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Cdx2P43241 Cbl-206ENSMUST00000206147 3452 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
Cdx2P43241 Bcl9l-201ENSMUST00000074989 5339 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx2P43241 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx2P43241 Dlgap1-202ENSMUST00000097288 2626 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx2P43241 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Cdx2P43241 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC11.5□□□□□ -0.57
Cdx2P43241 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC11.5□□□□□ -0.57
Cdx2P43241 Olfr156-203ENSMUST00000214843 1559 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Cdx2P43241 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx2P43241 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx2P43241 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx2P43241 Vps4b-201ENSMUST00000094646 4633 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx2P43241 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx2P43241 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx2P43241 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx2P43241 Celsr1-201ENSMUST00000016172 10879 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx2P43241 Slc5a11-207ENSMUST00000167299 2022 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Cdx2P43241 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx2P43241 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx2P43241 Gm13937-201ENSMUST00000121000 988 ntBASIC11.49□□□□□ -0.57
Cdx2P43241 Gm13205-201ENSMUST00000123548 562 ntTSL 3 BASIC11.49□□□□□ -0.57
Cdx2P43241 Gm13822-201ENSMUST00000127563 346 ntTSL 3 BASIC11.49□□□□□ -0.57
Cdx2P43241 Gm16347-202ENSMUST00000149000 772 ntTSL 3 BASIC11.49□□□□□ -0.57
Cdx2P43241 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC11.49□□□□□ -0.57
Cdx2P43241 Spdye4a-202ENSMUST00000160502 1245 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx2P43241 Hmgn3-201ENSMUST00000161796 862 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Cdx2P43241 Wdr53-204ENSMUST00000178573 1153 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
Cdx2P43241 Gm17877-201ENSMUST00000192578 814 ntBASIC11.49□□□□□ -0.57
Cdx2P43241 Ighv5-11-201ENSMUST00000193354 371 ntBASIC11.49□□□□□ -0.57
Cdx2P43241 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC11.49□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 48 ms