Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 A530053M12Rik-201ENSMUST00000187918 1467 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col18a1P39061 Gm13192-201ENSMUST00000101199 208 ntBASIC15.66■□□□□ 0.1
Col18a1P39061 Bcl2l11-204ENSMUST00000103211 672 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
Col18a1P39061 Gm10443-201ENSMUST00000119024 210 ntBASIC15.66■□□□□ 0.1
Col18a1P39061 Gm13624-201ENSMUST00000120263 462 ntBASIC15.66■□□□□ 0.1
Col18a1P39061 Gm26313-201ENSMUST00000157770 308 ntBASIC15.66■□□□□ 0.1
Col18a1P39061 Gm27440-201ENSMUST00000184785 107 ntBASIC15.66■□□□□ 0.1
Col18a1P39061 Gm20568-201ENSMUST00000197129 208 ntBASIC15.66■□□□□ 0.1
Col18a1P39061 Ywhaq-ps1-201ENSMUST00000206623 710 ntBASIC15.66■□□□□ 0.1
Col18a1P39061 Gm18001-201ENSMUST00000212023 688 ntBASIC15.66■□□□□ 0.1
Col18a1P39061 Gm45875-201ENSMUST00000212178 781 ntTSL 3 BASIC15.66■□□□□ 0.1
Col18a1P39061 AC174797.2-201ENSMUST00000225835 165 ntBASIC15.66■□□□□ 0.1
Col18a1P39061 Gzmk-201ENSMUST00000038212 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col18a1P39061 Defb29-201ENSMUST00000060598 462 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col18a1P39061 Gm10676-201ENSMUST00000098778 3221 ntBASIC15.66■□□□□ 0.1
Col18a1P39061 Eef1akmt3-201ENSMUST00000116231 2719 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Col18a1P39061 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
Col18a1P39061 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
Col18a1P39061 Pdzk1-202ENSMUST00000107069 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col18a1P39061 Cacna2d3-201ENSMUST00000022567 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col18a1P39061 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col18a1P39061 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col18a1P39061 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 Gm45638-201ENSMUST00000211507 2878 ntBASIC15.65■□□□□ 0.1
Col18a1P39061 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
Col18a1P39061 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 Adam20-201ENSMUST00000056331 2589 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 Gm12470-201ENSMUST00000117239 1049 ntBASIC15.65■□□□□ 0.1
Col18a1P39061 Gm9133-201ENSMUST00000118289 540 ntBASIC15.65■□□□□ 0.1
Col18a1P39061 Gm8302-201ENSMUST00000119217 852 ntBASIC15.65■□□□□ 0.1
Col18a1P39061 Gm27191-201ENSMUST00000145973 448 ntTSL 3 BASIC15.65■□□□□ 0.1
Col18a1P39061 Gm13267-202ENSMUST00000150099 281 ntTSL 2 BASIC15.65■□□□□ 0.1
Col18a1P39061 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 Tex33-202ENSMUST00000165170 1072 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 1700088E04Rik-207ENSMUST00000188562 631 ntTSL 3 BASIC15.65■□□□□ 0.1
Col18a1P39061 Gm34973-201ENSMUST00000217087 572 ntTSL 3 BASIC15.65■□□□□ 0.1
Col18a1P39061 AC154213.1-201ENSMUST00000228234 583 ntBASIC15.65■□□□□ 0.1
Col18a1P39061 Naca-201ENSMUST00000073868 885 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 Tex33-201ENSMUST00000074380 1147 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 Ifi27-203ENSMUST00000076788 708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 Pram1-201ENSMUST00000052079 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 Myzap-201ENSMUST00000093823 2283 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 Pars2-201ENSMUST00000058905 2191 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC15.65■□□□□ 0.1
Col18a1P39061 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC15.65■□□□□ 0.1
Col18a1P39061 Nrf1-220ENSMUST00000170535 1527 ntTSL 5 BASIC15.65■□□□□ 0.1
Col18a1P39061 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 Eif2c5-201ENSMUST00000125609 1416 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 Atp2b3-203ENSMUST00000114479 4637 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Col18a1P39061 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 Cldn34c1-201ENSMUST00000113343 3301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Col18a1P39061 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 Gabpb1-202ENSMUST00000089745 3254 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 Camkk1-201ENSMUST00000092937 3424 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col18a1P39061 Bnip2-208ENSMUST00000165389 945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.1
Col18a1P39061 Gm6216-201ENSMUST00000182390 687 ntBASIC15.64■□□□□ 0.1
Col18a1P39061 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC15.64■□□□□ 0.1
Col18a1P39061 Gm29135-201ENSMUST00000188411 612 ntTSL 5 BASIC15.64■□□□□ 0.1
Col18a1P39061 Clec2h-202ENSMUST00000204416 386 ntTSL 3 BASIC15.64■□□□□ 0.1
Col18a1P39061 4921508M14Rik-201ENSMUST00000061679 1099 ntBASIC15.64■□□□□ 0.1
Col18a1P39061 Gk-201ENSMUST00000026039 4340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col18a1P39061 Btnl7-ps-201ENSMUST00000023469 1763 ntBASIC15.64■□□□□ 0.09
Col18a1P39061 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col18a1P39061 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col18a1P39061 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col18a1P39061 Scyl3-207ENSMUST00000170359 4288 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Col18a1P39061 AC166361.2-201ENSMUST00000219269 1415 ntBASIC15.64■□□□□ 0.09
Col18a1P39061 Amz1-201ENSMUST00000060918 2683 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col18a1P39061 A530013C23Rik-201ENSMUST00000130679 2555 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Col18a1P39061 Khdrbs1-201ENSMUST00000066257 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col18a1P39061 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col18a1P39061 Slc24a5-201ENSMUST00000070353 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col18a1P39061 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col18a1P39061 Gm13583-202ENSMUST00000151931 1476 ntTSL 2 BASIC15.64■□□□□ 0.09
Col18a1P39061 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col18a1P39061 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col18a1P39061 AC123834.1-201ENSMUST00000225346 2043 ntBASIC15.64■□□□□ 0.09
Col18a1P39061 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC15.64■□□□□ 0.09
Col18a1P39061 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col18a1P39061 C330021F23Rik-204ENSMUST00000151633 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col18a1P39061 Gstt3-203ENSMUST00000173537 687 ntTSL 3 BASIC15.64■□□□□ 0.09
Col18a1P39061 Gm20694-201ENSMUST00000176943 404 ntBASIC15.64■□□□□ 0.09
Col18a1P39061 Higd1c-202ENSMUST00000177211 555 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col18a1P39061 Gm26875-201ENSMUST00000181006 950 ntBASIC15.64■□□□□ 0.09
Col18a1P39061 BC028471-201ENSMUST00000200937 520 ntTSL 2 BASIC15.64■□□□□ 0.09
Col18a1P39061 Gm44698-201ENSMUST00000207382 384 ntTSL 5 BASIC15.64■□□□□ 0.09
Col18a1P39061 Prrg2-211ENSMUST00000211337 676 ntTSL 3 BASIC15.64■□□□□ 0.09
Col18a1P39061 AC153929.1-201ENSMUST00000219009 303 ntBASIC15.64■□□□□ 0.09
Col18a1P39061 Nme6-201ENSMUST00000035053 1074 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col18a1P39061 C330021F23Rik-201ENSMUST00000086479 1111 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
Col18a1P39061 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col18a1P39061 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Col18a1P39061 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col18a1P39061 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms