Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Kcnma1-212ENSMUST00000188285 4440 ntAPPRIS P4 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Rgs11-202ENSMUST00000122058 2005 ntAPPRIS ALT2 TSL 2 BASIC11.25□□□□□ -0.61
Cd40lgP27548 Mtm1-201ENSMUST00000025391 3286 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Gpd1l-202ENSMUST00000129305 2543 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
Cd40lgP27548 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC11.25□□□□□ -0.61
Cd40lgP27548 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC11.25□□□□□ -0.61
Cd40lgP27548 Gm15547-201ENSMUST00000122152 333 ntBASIC11.25□□□□□ -0.61
Cd40lgP27548 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC11.25□□□□□ -0.61
Cd40lgP27548 Gm25668-201ENSMUST00000157700 129 ntBASIC11.25□□□□□ -0.61
Cd40lgP27548 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC11.25□□□□□ -0.61
Cd40lgP27548 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC11.25□□□□□ -0.61
Cd40lgP27548 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC11.25□□□□□ -0.61
Cd40lgP27548 AC166095.1-201ENSMUST00000223731 1241 ntBASIC11.25□□□□□ -0.61
Cd40lgP27548 Gm10371-202ENSMUST00000228010 1081 ntBASIC11.25□□□□□ -0.61
Cd40lgP27548 Snx24-201ENSMUST00000025417 994 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Vmn1r217-201ENSMUST00000091721 897 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
Cd40lgP27548 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC11.25□□□□□ -0.61
Cd40lgP27548 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC11.25□□□□□ -0.61
Cd40lgP27548 Lypd6-202ENSMUST00000112712 3495 ntAPPRIS P1 TSL 5 BASIC11.25□□□□□ -0.61
Cd40lgP27548 Myh10-204ENSMUST00000108673 1315 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Grip1-205ENSMUST00000105262 4996 ntAPPRIS ALT2 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Gm36356-201ENSMUST00000209224 2277 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Tsku-201ENSMUST00000094161 2760 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Rbm47-202ENSMUST00000094757 4643 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Retreg1-206ENSMUST00000228306 1430 ntBASIC11.25□□□□□ -0.61
Cd40lgP27548 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Hp1bp3-201ENSMUST00000030541 3311 ntAPPRIS P3 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Hexim2-201ENSMUST00000062530 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Cln8-201ENSMUST00000027554 6857 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Pabpc4-202ENSMUST00000080178 3019 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Asb3-202ENSMUST00000117883 2509 ntTSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Zfp954-201ENSMUST00000056246 2042 ntAPPRIS P1 TSL 1 (best) BASIC11.25□□□□□ -0.61
Cd40lgP27548 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Zfp646-201ENSMUST00000050383 6310 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Myom3-201ENSMUST00000105854 5575 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Cd40lgP27548 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Med13l-201ENSMUST00000100816 9296 ntAPPRIS P3 TSL 2 BASIC11.24□□□□□ -0.61
Cd40lgP27548 Lrp12-201ENSMUST00000022916 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Tcf4-249ENSMUST00000202435 2427 ntTSL 5 BASIC11.24□□□□□ -0.61
Cd40lgP27548 AC124577.2-201ENSMUST00000217413 2420 ntBASIC11.24□□□□□ -0.61
Cd40lgP27548 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Ptprt-204ENSMUST00000109445 12082 ntAPPRIS P3 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Gm13736-201ENSMUST00000119272 253 ntBASIC11.24□□□□□ -0.61
Cd40lgP27548 Gm13394-201ENSMUST00000121658 1000 ntBASIC11.24□□□□□ -0.61
Cd40lgP27548 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC11.24□□□□□ -0.61
Cd40lgP27548 Acyp1-204ENSMUST00000121930 634 ntTSL 2 BASIC11.24□□□□□ -0.61
Cd40lgP27548 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC11.24□□□□□ -0.61
Cd40lgP27548 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Gm38000-201ENSMUST00000192390 1215 ntBASIC11.24□□□□□ -0.61
Cd40lgP27548 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Rad51d-202ENSMUST00000021033 1201 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC11.24□□□□□ -0.61
Cd40lgP27548 Gm17080-201ENSMUST00000087588 811 ntTSL 5 BASIC11.24□□□□□ -0.61
Cd40lgP27548 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Cd40lgP27548 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC11.24□□□□□ -0.61
Cd40lgP27548 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Gm32036-201ENSMUST00000221484 2638 ntTSL 2 BASIC11.24□□□□□ -0.61
Cd40lgP27548 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC11.24□□□□□ -0.61
Cd40lgP27548 Plg-201ENSMUST00000014578 2755 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Olfr464-204ENSMUST00000216461 2112 ntAPPRIS P1 TSL 5 BASIC11.24□□□□□ -0.61
Cd40lgP27548 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 5830411N06Rik-202ENSMUST00000093984 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Zfp423-201ENSMUST00000052250 4510 ntAPPRIS ALT2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Tspan12-201ENSMUST00000031678 2490 ntAPPRIS P1 TSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Nrg1-201ENSMUST00000073884 2452 ntTSL 1 (best) BASIC11.24□□□□□ -0.61
Cd40lgP27548 Mob3b-201ENSMUST00000102975 6030 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cd40lgP27548 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cd40lgP27548 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cd40lgP27548 Pnpla6-212ENSMUST00000208002 4444 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cd40lgP27548 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cd40lgP27548 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cd40lgP27548 Gm43051-201ENSMUST00000201096 2678 ntBASIC11.23□□□□□ -0.61
Cd40lgP27548 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cd40lgP27548 Smarca2-209ENSMUST00000176030 5862 ntAPPRIS ALT2 TSL 5 BASIC11.23□□□□□ -0.61
Cd40lgP27548 Jmjd4-202ENSMUST00000108777 4351 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cd40lgP27548 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC11.23□□□□□ -0.61
Cd40lgP27548 Myo7a-201ENSMUST00000084979 6849 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
Cd40lgP27548 Itfg2-201ENSMUST00000001559 2320 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cd40lgP27548 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
Cd40lgP27548 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Cd40lgP27548 Olfr177-202ENSMUST00000217377 2401 ntAPPRIS P1 TSL 5 BASIC11.23□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 53.9 ms