Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Msra-201ENSMUST00000067927 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col1a1P11087 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
Col1a1P11087 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col1a1P11087 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col1a1P11087 Camsap1-202ENSMUST00000114167 7981 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
Col1a1P11087 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Col1a1P11087 Cdh11-201ENSMUST00000075190 5647 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col1a1P11087 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Col1a1P11087 Gpr132-201ENSMUST00000021729 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col1a1P11087 Serinc2-202ENSMUST00000120126 1452 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Col1a1P11087 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col1a1P11087 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col1a1P11087 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
Col1a1P11087 Pttg1-203ENSMUST00000101340 700 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Col1a1P11087 Pttg1-205ENSMUST00000118368 696 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Col1a1P11087 Gm12274-201ENSMUST00000120062 385 ntBASIC14.04□□□□□ -0.16
Col1a1P11087 Gm12682-201ENSMUST00000144637 1081 ntTSL 5 BASIC14.04□□□□□ -0.16
Col1a1P11087 Hmga2-203ENSMUST00000159699 3810 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Col1a1P11087 Gm20400-201ENSMUST00000173695 665 ntTSL 3 BASIC14.04□□□□□ -0.16
Col1a1P11087 Gm9192-201ENSMUST00000183221 985 ntBASIC14.04□□□□□ -0.16
Col1a1P11087 Ccl4-201ENSMUST00000019074 660 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col1a1P11087 Gm43778-201ENSMUST00000199438 199 ntBASIC14.04□□□□□ -0.16
Col1a1P11087 Gm18561-201ENSMUST00000206027 804 ntBASIC14.04□□□□□ -0.16
Col1a1P11087 Gm8436-201ENSMUST00000210152 1080 ntBASIC14.04□□□□□ -0.16
Col1a1P11087 Gm5749-201ENSMUST00000210673 1090 ntBASIC14.04□□□□□ -0.16
Col1a1P11087 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC14.04□□□□□ -0.16
Col1a1P11087 Stt3a-209ENSMUST00000217599 285 ntTSL 5 BASIC14.04□□□□□ -0.16
Col1a1P11087 Pcgf5-204ENSMUST00000224772 1266 ntAPPRIS ALT1 BASIC14.04□□□□□ -0.16
Col1a1P11087 Chmp3-202ENSMUST00000065364 998 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col1a1P11087 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col1a1P11087 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Col1a1P11087 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
Col1a1P11087 Spred3-201ENSMUST00000048923 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col1a1P11087 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col1a1P11087 AC116503.1-201ENSMUST00000215445 2192 ntBASIC14.04□□□□□ -0.16
Col1a1P11087 Gm7002-201ENSMUST00000221386 2165 ntBASIC14.04□□□□□ -0.16
Col1a1P11087 Zfp711-202ENSMUST00000113409 4330 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
Col1a1P11087 Gm45199-201ENSMUST00000207640 1507 ntBASIC14.03□□□□□ -0.16
Col1a1P11087 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Col1a1P11087 Nol9-201ENSMUST00000084116 3722 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col1a1P11087 Dll1-201ENSMUST00000014917 3581 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col1a1P11087 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Col1a1P11087 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Col1a1P11087 Kcnj12-203ENSMUST00000108717 2463 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col1a1P11087 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Col1a1P11087 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col1a1P11087 Gm44056-201ENSMUST00000204623 1427 ntBASIC14.03□□□□□ -0.16
Col1a1P11087 Gm25053-201ENSMUST00000103982 133 ntBASIC14.03□□□□□ -0.16
Col1a1P11087 Gm25922-201ENSMUST00000104281 130 ntBASIC14.03□□□□□ -0.16
Col1a1P11087 Gm15036-201ENSMUST00000118880 400 ntBASIC14.03□□□□□ -0.16
Col1a1P11087 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC14.03□□□□□ -0.16
Col1a1P11087 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Col1a1P11087 Fyn-207ENSMUST00000146287 2135 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Col1a1P11087 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC14.03□□□□□ -0.16
Col1a1P11087 Gm24679-201ENSMUST00000158762 111 ntBASIC14.03□□□□□ -0.16
Col1a1P11087 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC14.03□□□□□ -0.16
Col1a1P11087 Mir6923-201ENSMUST00000184592 72 ntBASIC14.03□□□□□ -0.16
Col1a1P11087 5730585A16Rik-201ENSMUST00000193457 1027 ntBASIC14.03□□□□□ -0.16
Col1a1P11087 Gm35025-203ENSMUST00000193519 634 ntTSL 3 BASIC14.03□□□□□ -0.16
Col1a1P11087 Znhit6-206ENSMUST00000199033 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col1a1P11087 Gm25053-202ENSMUST00000199731 132 ntBASIC14.03□□□□□ -0.16
Col1a1P11087 Gng8-202ENSMUST00000205459 522 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
Col1a1P11087 Gm18968-201ENSMUST00000221319 862 ntBASIC14.03□□□□□ -0.16
Col1a1P11087 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC14.03□□□□□ -0.16
Col1a1P11087 Dydc2-201ENSMUST00000022316 818 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col1a1P11087 CT573086.4-201ENSMUST00000226729 342 ntBASIC14.03□□□□□ -0.16
Col1a1P11087 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col1a1P11087 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col1a1P11087 Tle6-210ENSMUST00000142948 1961 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col1a1P11087 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col1a1P11087 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col1a1P11087 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col1a1P11087 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Col1a1P11087 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col1a1P11087 Gm8155-201ENSMUST00000216363 1612 ntBASIC14.03□□□□□ -0.16
Col1a1P11087 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col1a1P11087 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC14.02□□□□□ -0.16
Col1a1P11087 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col1a1P11087 Tmem30a-201ENSMUST00000034878 3658 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col1a1P11087 Cct6a-202ENSMUST00000201414 2454 ntTSL 5 BASIC14.02□□□□□ -0.16
Col1a1P11087 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Col1a1P11087 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col1a1P11087 Gm2000-201ENSMUST00000102782 445 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
Col1a1P11087 Ighv5-9-201ENSMUST00000103448 418 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
Col1a1P11087 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Col1a1P11087 Gm28306-201ENSMUST00000191315 529 ntTSL 5 BASIC14.02□□□□□ -0.16
Col1a1P11087 Gm9884-201ENSMUST00000194343 1222 ntBASIC14.02□□□□□ -0.16
Col1a1P11087 2010109P13Rik-201ENSMUST00000204605 392 ntBASIC14.02□□□□□ -0.16
Col1a1P11087 Gm45500-201ENSMUST00000211676 803 ntBASIC14.02□□□□□ -0.16
Col1a1P11087 Gm19640-201ENSMUST00000214849 464 ntBASIC14.02□□□□□ -0.16
Col1a1P11087 Gm18514-201ENSMUST00000218980 436 ntBASIC14.02□□□□□ -0.16
Col1a1P11087 Rps10-ps1-201ENSMUST00000074353 495 ntBASIC14.02□□□□□ -0.16
Col1a1P11087 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Col1a1P11087 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col1a1P11087 Plekha7-203ENSMUST00000181998 5149 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col1a1P11087 Gm28047-201ENSMUST00000184772 1611 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
Col1a1P11087 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col1a1P11087 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Col1a1P11087 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
Col1a1P11087 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 65.2 ms