Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC9.65□□□□□ -0.87
Hoxd3P09027 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
Hoxd3P09027 Plk-ps1-201ENSMUST00000119494 1787 ntBASIC9.65□□□□□ -0.87
Hoxd3P09027 Gm2694-202ENSMUST00000180806 1452 ntTSL 1 (best) BASIC9.65□□□□□ -0.87
Hoxd3P09027 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC9.65□□□□□ -0.87
Hoxd3P09027 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC9.65□□□□□ -0.87
Hoxd3P09027 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC9.65□□□□□ -0.87
Hoxd3P09027 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC9.65□□□□□ -0.87
Hoxd3P09027 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
Hoxd3P09027 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC9.65□□□□□ -0.87
Hoxd3P09027 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC9.65□□□□□ -0.87
Hoxd3P09027 Ablim2-209ENSMUST00000129347 1995 ntAPPRIS ALT2 TSL 5 BASIC9.64□□□□□ -0.87
Hoxd3P09027 Trappc12-201ENSMUST00000020954 3377 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC9.64□□□□□ -0.87
Hoxd3P09027 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Slc6a20a-201ENSMUST00000040960 2732 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 5830432E09Rik-203ENSMUST00000210953 2428 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 H2-Ob-202ENSMUST00000167280 1878 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Gm45114-201ENSMUST00000208280 1349 ntBASIC9.64□□□□□ -0.87
Hoxd3P09027 Gm6741-201ENSMUST00000057074 1330 ntAPPRIS P1 BASIC9.64□□□□□ -0.87
Hoxd3P09027 8430408G22Rik-201ENSMUST00000067354 1339 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC9.64□□□□□ -0.87
Hoxd3P09027 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC9.64□□□□□ -0.87
Hoxd3P09027 Car6-201ENSMUST00000030817 1567 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Ddx19b-202ENSMUST00000065784 3104 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC9.64□□□□□ -0.87
Hoxd3P09027 Zfp64-203ENSMUST00000109162 2848 ntAPPRIS P1 TSL 2 BASIC9.64□□□□□ -0.87
Hoxd3P09027 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC9.64□□□□□ -0.87
Hoxd3P09027 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC9.64□□□□□ -0.87
Hoxd3P09027 Gm13665-201ENSMUST00000120830 528 ntBASIC9.64□□□□□ -0.87
Hoxd3P09027 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Gm11210-201ENSMUST00000150203 422 ntTSL 3 BASIC9.64□□□□□ -0.87
Hoxd3P09027 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC9.64□□□□□ -0.87
Hoxd3P09027 Vmn1r23-201ENSMUST00000175817 997 ntAPPRIS P1 BASIC9.64□□□□□ -0.87
Hoxd3P09027 Gm2383-201ENSMUST00000181461 807 ntBASIC9.64□□□□□ -0.87
Hoxd3P09027 Gm28882-201ENSMUST00000185504 314 ntBASIC9.64□□□□□ -0.87
Hoxd3P09027 Gm8641-201ENSMUST00000186995 826 ntBASIC9.64□□□□□ -0.87
Hoxd3P09027 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Gm44967-201ENSMUST00000207047 631 ntBASIC9.64□□□□□ -0.87
Hoxd3P09027 Mt2-202ENSMUST00000212806 388 ntTSL 2 BASIC9.64□□□□□ -0.87
Hoxd3P09027 Trdn-207ENSMUST00000219931 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Mlana-201ENSMUST00000025719 623 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC9.64□□□□□ -0.87
Hoxd3P09027 mt-Atp6-201ENSMUST00000082408 681 ntAPPRIS P1 BASIC9.64□□□□□ -0.87
Hoxd3P09027 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC9.64□□□□□ -0.87
Hoxd3P09027 Pnpla6-211ENSMUST00000207941 4263 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Ppm1b-204ENSMUST00000112307 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC9.64□□□□□ -0.87
Hoxd3P09027 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Retreg1-206ENSMUST00000228306 1430 ntBASIC9.64□□□□□ -0.87
Hoxd3P09027 Stpg3-201ENSMUST00000043774 1430 ntAPPRIS P2 TSL 1 (best) BASIC9.64□□□□□ -0.87
Hoxd3P09027 Gm42748-201ENSMUST00000199354 2341 ntBASIC9.64□□□□□ -0.87
Hoxd3P09027 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC9.63□□□□□ -0.87
Hoxd3P09027 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Gm45833-201ENSMUST00000211931 2730 ntTSL 5 BASIC9.63□□□□□ -0.87
Hoxd3P09027 Acin1-221ENSMUST00000150371 2494 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC9.63□□□□□ -0.87
Hoxd3P09027 Gm8617-201ENSMUST00000118796 2222 ntBASIC9.63□□□□□ -0.87
Hoxd3P09027 Dct-201ENSMUST00000022725 2202 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Wdr45-223ENSMUST00000207675 1335 ntTSL 5 BASIC9.63□□□□□ -0.87
Hoxd3P09027 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.87
Hoxd3P09027 Gm45765-202ENSMUST00000212921 1313 ntTSL 5 BASIC9.63□□□□□ -0.87
Hoxd3P09027 Rgs12-205ENSMUST00000114283 2628 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.87
Hoxd3P09027 Pcdh10-202ENSMUST00000170695 8234 ntAPPRIS P3 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Pik3r6-202ENSMUST00000102613 3225 ntAPPRIS P3 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Prrt3-205ENSMUST00000205170 1903 ntAPPRIS ALT2 TSL 2 BASIC9.63□□□□□ -0.87
Hoxd3P09027 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Plekhm1-201ENSMUST00000041272 5968 ntAPPRIS P1 TSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC9.63□□□□□ -0.87
Hoxd3P09027 Rhox2c-201ENSMUST00000115190 762 ntAPPRIS P1 TSL 5 BASIC9.63□□□□□ -0.87
Hoxd3P09027 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC9.63□□□□□ -0.87
Hoxd3P09027 Gm15829-201ENSMUST00000145415 869 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Gm12227-201ENSMUST00000147847 563 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Olfr772-201ENSMUST00000169800 1004 ntAPPRIS P1 BASIC9.63□□□□□ -0.87
Hoxd3P09027 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC9.63□□□□□ -0.87
Hoxd3P09027 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Gm27246-201ENSMUST00000183611 1240 ntTSL 5 BASIC9.63□□□□□ -0.87
Hoxd3P09027 Gsdmcl-ps-204ENSMUST00000191285 637 ntTSL 3 BASIC9.63□□□□□ -0.87
Hoxd3P09027 AA914427-201ENSMUST00000193194 1166 ntBASIC9.63□□□□□ -0.87
Hoxd3P09027 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC9.63□□□□□ -0.87
Hoxd3P09027 Gm5869-201ENSMUST00000200248 1257 ntBASIC9.63□□□□□ -0.87
Hoxd3P09027 Gm44061-201ENSMUST00000203962 1195 ntBASIC9.63□□□□□ -0.87
Hoxd3P09027 AC159747.1-201ENSMUST00000219903 265 ntBASIC9.63□□□□□ -0.87
Retrieved 100 of 76,532 protein–RNA pairs in 41.8 ms