Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Gm26448-201ENSMUST00000082446 203 ntBASIC13.18□□□□□ -0.3
Trim54Q9ERP3 Capn5-202ENSMUST00000107112 2232 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim54Q9ERP3 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim54Q9ERP3 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim54Q9ERP3 Olfr533-206ENSMUST00000217179 2825 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Trim54Q9ERP3 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim54Q9ERP3 Gm28323-201ENSMUST00000186817 2499 ntBASIC13.18□□□□□ -0.3
Trim54Q9ERP3 C130026L21Rik-201ENSMUST00000064930 2472 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Trim54Q9ERP3 Pfn4-204ENSMUST00000219503 4775 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Trim54Q9ERP3 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Trim54Q9ERP3 Oas1e-201ENSMUST00000100785 1801 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim54Q9ERP3 Sectm1b-201ENSMUST00000039309 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim54Q9ERP3 Gm42480-201ENSMUST00000198434 2595 ntBASIC13.18□□□□□ -0.3
Trim54Q9ERP3 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Trim54Q9ERP3 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trim54Q9ERP3 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Pnma3-201ENSMUST00000060418 3405 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Myo7a-203ENSMUST00000107127 6806 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Mir680-2-201ENSMUST00000102163 110 ntBASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Gm23251-201ENSMUST00000103773 110 ntBASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Rpl28-ps1-201ENSMUST00000121497 414 ntBASIC13.17□□□□□ -0.3
Trim54Q9ERP3 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Gm10051-201ENSMUST00000145209 414 ntBASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Gm27530-201ENSMUST00000184096 98 ntBASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Gm3508-201ENSMUST00000186012 792 ntBASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Gm45770-201ENSMUST00000212105 616 ntBASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Gm1821-202ENSMUST00000227415 750 ntBASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Mir219a-1-201ENSMUST00000083621 110 ntBASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Rtn4-203ENSMUST00000102841 4060 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Pfkfb3-213ENSMUST00000171188 2058 ntTSL 5 BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Gm6580-201ENSMUST00000117504 1357 ntBASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Gm28719-201ENSMUST00000187779 1757 ntBASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Mfap3l-202ENSMUST00000160719 6335 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trim54Q9ERP3 Cyp2j13-203ENSMUST00000107078 1493 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 BC030867-201ENSMUST00000100392 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Pck2-205ENSMUST00000226352 2784 ntBASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Elk1-201ENSMUST00000009550 3548 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Sidt1-205ENSMUST00000136381 4404 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 AC241621.2-201ENSMUST00000223991 2151 ntBASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Ccl1-202ENSMUST00000108189 514 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 H2-Q3-201ENSMUST00000172583 608 ntBASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Glmp-208ENSMUST00000176519 447 ntTSL 5 BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Zfp229-206ENSMUST00000183192 653 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Gm3332-201ENSMUST00000189337 928 ntBASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Gm5733-201ENSMUST00000190232 939 ntBASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Gm43184-201ENSMUST00000197247 542 ntBASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Gm42682-201ENSMUST00000198349 1265 ntBASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Gm10109-202ENSMUST00000206890 1211 ntBASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Ccl1-201ENSMUST00000021043 611 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Gm18556-201ENSMUST00000219748 1031 ntBASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Gm10109-201ENSMUST00000072123 1078 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Gm43677-201ENSMUST00000198098 2378 ntBASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Kmt2e-201ENSMUST00000094962 7252 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Ppfia4-205ENSMUST00000189361 5238 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Trim54Q9ERP3 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim54Q9ERP3 AC154262.2-202ENSMUST00000225158 1331 ntBASIC13.15□□□□□ -0.3
Trim54Q9ERP3 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim54Q9ERP3 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Trim54Q9ERP3 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim54Q9ERP3 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim54Q9ERP3 Usp13-201ENSMUST00000072312 7580 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim54Q9ERP3 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trim54Q9ERP3 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms