Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdc40Q9DC48 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdc40Q9DC48 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdc40Q9DC48 Matn2-203ENSMUST00000226766 3252 ntBASIC11.32□□□□□ -0.6
Cdc40Q9DC48 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cdc40Q9DC48 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdc40Q9DC48 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC11.32□□□□□ -0.6
Cdc40Q9DC48 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cdc40Q9DC48 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdc40Q9DC48 Nsmce2-202ENSMUST00000168722 2679 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Cdc40Q9DC48 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC11.32□□□□□ -0.6
Cdc40Q9DC48 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Cdc40Q9DC48 Drc3-202ENSMUST00000094140 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Nexmif-203ENSMUST00000118314 11476 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 6030442K20Rik-201ENSMUST00000180835 1540 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Tssk5-201ENSMUST00000071119 1518 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Oprd1-201ENSMUST00000056336 4021 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Cyp4f17-201ENSMUST00000165999 1693 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Tmsb10-201ENSMUST00000114048 623 ntAPPRIS P1 TSL 3 BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Gm13736-201ENSMUST00000119272 253 ntBASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Gm13665-201ENSMUST00000120830 528 ntBASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Gm11597-201ENSMUST00000121423 964 ntBASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Gm26361-201ENSMUST00000158868 186 ntBASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Cryge-202ENSMUST00000161960 690 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 AA914427-201ENSMUST00000193194 1166 ntBASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Gm44262-201ENSMUST00000204969 372 ntBASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Gm7619-201ENSMUST00000210649 1282 ntBASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Vmo1-201ENSMUST00000021179 672 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Psmb2-201ENSMUST00000030642 859 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Trim9-209ENSMUST00000222316 3049 ntTSL 2 BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Txlna-202ENSMUST00000084264 4847 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Lrrc57-203ENSMUST00000102498 1901 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Gm43061-201ENSMUST00000198850 2241 ntBASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Kank4-201ENSMUST00000102790 4795 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Cdc40Q9DC48 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Zmat1-202ENSMUST00000113185 3378 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Ddx17-201ENSMUST00000054014 4761 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Prox1os-201ENSMUST00000110279 828 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Gm12314-201ENSMUST00000118104 538 ntBASIC11.3□□□□□ -0.6
Cdc40Q9DC48 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Gm43138-201ENSMUST00000199123 708 ntBASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Gm44651-201ENSMUST00000207343 372 ntBASIC11.3□□□□□ -0.6
Cdc40Q9DC48 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Gm19605-202ENSMUST00000221514 1084 ntTSL 5 BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Crabp2-201ENSMUST00000005019 931 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Gm10312-201ENSMUST00000078515 489 ntBASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Plekhg2-201ENSMUST00000094644 4623 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Gm37437-201ENSMUST00000194451 1937 ntBASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Agrn-203ENSMUST00000105575 7262 ntTSL 5 BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Ankrd35-201ENSMUST00000048427 4052 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Exog-201ENSMUST00000035094 3832 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Cdc40Q9DC48 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 43.2 ms