Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Zfand2a-202ENSMUST00000110851 3121 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Mtr-201ENSMUST00000099856 8294 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Psd2-205ENSMUST00000176873 4375 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Vps16-201ENSMUST00000028900 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Vamp1-201ENSMUST00000032487 2772 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Gm8862-201ENSMUST00000198379 1346 ntBASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Crkl-201ENSMUST00000006293 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Smc1aQ9CU62 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Lypd6-202ENSMUST00000112712 3495 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Gm38157-201ENSMUST00000194178 1698 ntBASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Steap3-202ENSMUST00000112640 2752 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 AC156031.2-201ENSMUST00000213107 3310 ntBASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Gm43289-201ENSMUST00000200537 1475 ntBASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Gm19221-201ENSMUST00000221827 1477 ntBASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Rbms2-201ENSMUST00000092033 1481 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Mogat1-202ENSMUST00000113524 1228 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Gm10863-201ENSMUST00000130745 438 ntTSL 3 BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Gm24990-201ENSMUST00000157406 323 ntBASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Gm22121-201ENSMUST00000175148 54 ntBASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Gm18212-201ENSMUST00000211678 889 ntBASIC13.63□□□□□ -0.23
Smc1aQ9CU62 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Odf4-201ENSMUST00000038932 1078 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Iqcc-201ENSMUST00000046675 2639 ntAPPRIS P2 TSL 2 BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Tmem132a-201ENSMUST00000025645 3657 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Gm43075-201ENSMUST00000198613 3905 ntBASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Fnbp1-206ENSMUST00000113555 1776 ntTSL 5 BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Tmppe-201ENSMUST00000111820 2921 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Smc1aQ9CU62 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Adgre5-208ENSMUST00000166939 2980 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Grm7-202ENSMUST00000172951 4197 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Carmil1-201ENSMUST00000072889 4988 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Scn8a-208ENSMUST00000200963 5814 ntTSL 5 BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Tbcd-201ENSMUST00000103013 3906 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Snord83b-201ENSMUST00000104546 94 ntBASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Rpl19-ps12-201ENSMUST00000121251 591 ntBASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Gm15276-201ENSMUST00000145953 498 ntBASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Egfl7-209ENSMUST00000150404 892 ntAPPRIS P4 TSL 5 BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Gm2546-201ENSMUST00000182630 991 ntBASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Gm45186-201ENSMUST00000206874 478 ntBASIC13.62□□□□□ -0.23
Smc1aQ9CU62 AC126253.1-202ENSMUST00000226732 835 ntBASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Armc7-201ENSMUST00000035240 2260 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Bbof1-201ENSMUST00000081828 2187 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Terb1-201ENSMUST00000064576 2950 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Mcm8-202ENSMUST00000066559 3397 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Smc1aQ9CU62 Gm44775-201ENSMUST00000207266 1456 ntBASIC13.61□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 67.8 ms