Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Ccdc116-203ENSMUST00000115711 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Tspan1-201ENSMUST00000030465 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Gm7537-201ENSMUST00000221660 1414 ntBASIC16.6■□□□□ 0.25
Usp40Q8BWR4 AC158633.2-201ENSMUST00000222959 6046 ntTSL 5 BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Map1b-203ENSMUST00000223725 2669 ntBASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Nrf1-219ENSMUST00000167972 1541 ntTSL 5 BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Pkp1-201ENSMUST00000027667 4669 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Usp40Q8BWR4 Npepps-219ENSMUST00000172108 2924 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Usp40Q8BWR4 Gm10277-201ENSMUST00000092883 2295 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Usp40Q8BWR4 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Usp40Q8BWR4 Slc6a9-210ENSMUST00000169885 1876 ntTSL 5 BASIC16.59■□□□□ 0.25
Usp40Q8BWR4 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC16.59■□□□□ 0.25
Usp40Q8BWR4 Cul5-209ENSMUST00000166367 5942 ntTSL 5 BASIC16.59■□□□□ 0.25
Usp40Q8BWR4 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Usp40Q8BWR4 Stau1-204ENSMUST00000109238 2976 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Usp40Q8BWR4 Gm14314-201ENSMUST00000118225 1015 ntBASIC16.59■□□□□ 0.25
Usp40Q8BWR4 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC16.59■□□□□ 0.25
Usp40Q8BWR4 Gm27438-201ENSMUST00000183480 110 ntBASIC16.59■□□□□ 0.25
Usp40Q8BWR4 Mir8115-201ENSMUST00000184992 119 ntBASIC16.59■□□□□ 0.25
Usp40Q8BWR4 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Usp40Q8BWR4 Plp2-201ENSMUST00000033486 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Usp40Q8BWR4 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Usp40Q8BWR4 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Usp40Q8BWR4 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Usp40Q8BWR4 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Usp40Q8BWR4 Gm9796-201ENSMUST00000062249 2250 ntBASIC16.59■□□□□ 0.25
Usp40Q8BWR4 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Usp40Q8BWR4 Scube1-203ENSMUST00000076060 3913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Usp40Q8BWR4 Gm14132-201ENSMUST00000117188 1719 ntBASIC16.59■□□□□ 0.25
Usp40Q8BWR4 Smim13-201ENSMUST00000165561 4483 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Usp40Q8BWR4 BC006965-201ENSMUST00000124028 1952 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Usp40Q8BWR4 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
Usp40Q8BWR4 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Usp40Q8BWR4 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Usp40Q8BWR4 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Usp40Q8BWR4 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Usp40Q8BWR4 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
Usp40Q8BWR4 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
Usp40Q8BWR4 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Sin3a-208ENSMUST00000168678 5206 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Ctrc-202ENSMUST00000105781 784 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Rps9-204ENSMUST00000108625 914 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Gm13888-201ENSMUST00000119148 422 ntBASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Cldn16-202ENSMUST00000161053 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Taf9-201ENSMUST00000167256 1230 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 AC129219.2-201ENSMUST00000224324 701 ntBASIC16.58■□□□□ 0.24
Usp40Q8BWR4 AC159103.1-201ENSMUST00000228325 429 ntBASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Hopx-201ENSMUST00000081964 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Efcab14-203ENSMUST00000106524 1544 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Nbeal2-206ENSMUST00000133191 8782 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Rgs9bp-201ENSMUST00000069912 6590 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Gm37391-201ENSMUST00000194891 2318 ntBASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Tgm1-202ENSMUST00000168729 2852 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Cit-203ENSMUST00000112008 6087 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
Usp40Q8BWR4 Gad2-201ENSMUST00000028123 5744 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Abcc6-201ENSMUST00000002850 4974 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Anxa4-202ENSMUST00000113675 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Gm6903-201ENSMUST00000160509 1366 ntBASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Zfyve28-201ENSMUST00000094868 3983 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Gm14193-201ENSMUST00000105067 153 ntBASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Gm15352-201ENSMUST00000118696 270 ntBASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Gm14585-201ENSMUST00000120713 634 ntBASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Gm13328-201ENSMUST00000120816 1020 ntBASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Gm19705-203ENSMUST00000181491 678 ntTSL 5 BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Gm29676-202ENSMUST00000222409 364 ntTSL 2 BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 CT010465.1-201ENSMUST00000222463 809 ntTSL 5 BASIC16.57■□□□□ 0.24
Usp40Q8BWR4 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 40.5 ms