Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC14.31□□□□□ -0.12
Trim56Q80VI1 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Cryba2-201ENSMUST00000006721 720 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim56Q80VI1 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Ptpru-201ENSMUST00000030741 4416 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Dab2ip-206ENSMUST00000112987 6287 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Trim56Q80VI1 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Pde4d-205ENSMUST00000119507 2163 ntTSL 5 BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Dysf-201ENSMUST00000081904 6660 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Gm11511-201ENSMUST00000118146 540 ntBASIC14.3□□□□□ -0.12
Trim56Q80VI1 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC14.3□□□□□ -0.12
Trim56Q80VI1 Rtbdn-203ENSMUST00000121880 1223 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Gm25732-201ENSMUST00000175168 60 ntBASIC14.3□□□□□ -0.12
Trim56Q80VI1 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC14.3□□□□□ -0.12
Trim56Q80VI1 Gm37466-201ENSMUST00000195692 652 ntBASIC14.3□□□□□ -0.12
Trim56Q80VI1 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Gm42599-201ENSMUST00000201308 469 ntBASIC14.3□□□□□ -0.12
Trim56Q80VI1 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim56Q80VI1 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Gm42480-201ENSMUST00000198434 2595 ntBASIC14.3□□□□□ -0.12
Trim56Q80VI1 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC14.3□□□□□ -0.12
Trim56Q80VI1 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim56Q80VI1 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC14.3□□□□□ -0.12
Trim56Q80VI1 Eif2s1-201ENSMUST00000071230 3405 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Crybg2-213ENSMUST00000227683 5578 ntAPPRIS ALT2 BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Alms1-ps1-201ENSMUST00000159498 2166 ntBASIC14.3□□□□□ -0.12
Trim56Q80VI1 Hook2-204ENSMUST00000210326 3080 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC14.3□□□□□ -0.12
Trim56Q80VI1 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Gm5847-201ENSMUST00000178959 1595 ntBASIC14.3□□□□□ -0.12
Trim56Q80VI1 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Gm44152-201ENSMUST00000205007 1691 ntBASIC14.3□□□□□ -0.12
Trim56Q80VI1 Etl4-201ENSMUST00000045555 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Trim56Q80VI1 Mmel1-204ENSMUST00000105635 2592 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Wnt9b-201ENSMUST00000018630 4518 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Dhtkd1-202ENSMUST00000095147 5480 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Wdr20rt-201ENSMUST00000046331 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 4732414G09Rik-201ENSMUST00000156243 2422 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Gm7104-201ENSMUST00000179741 2532 ntBASIC14.29□□□□□ -0.12
Trim56Q80VI1 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Gm16066-201ENSMUST00000118575 1086 ntTSL 3 BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Bnip3-203ENSMUST00000130500 719 ntTSL 2 BASIC14.29□□□□□ -0.12
Trim56Q80VI1 3110056K07Rik-202ENSMUST00000136690 1063 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Gm28071-201ENSMUST00000190355 478 ntBASIC14.29□□□□□ -0.12
Trim56Q80VI1 Gm9136-201ENSMUST00000193368 454 ntBASIC14.29□□□□□ -0.12
Trim56Q80VI1 Pebp4-201ENSMUST00000022678 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Prr15l-202ENSMUST00000062172 1242 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Hist1h3a-201ENSMUST00000091701 534 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Pla2g3-202ENSMUST00000064265 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 St6galnac4-204ENSMUST00000179989 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Trim56Q80VI1 AC173482.6-201ENSMUST00000225889 1741 ntBASIC14.29□□□□□ -0.12
Trim56Q80VI1 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC14.29□□□□□ -0.12
Trim56Q80VI1 Gm8522-201ENSMUST00000118416 1929 ntBASIC14.29□□□□□ -0.12
Trim56Q80VI1 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trim56Q80VI1 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim56Q80VI1 Cars-201ENSMUST00000010899 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim56Q80VI1 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim56Q80VI1 Gm13133-201ENSMUST00000143888 736 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim56Q80VI1 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trim56Q80VI1 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trim56Q80VI1 Gm21859-201ENSMUST00000178424 1045 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms