Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
Ift88Q61371 Mapk8ip3-204ENSMUST00000117509 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 Gm43760-201ENSMUST00000202120 3015 ntBASIC13.42□□□□□ -0.26
Ift88Q61371 Gm12390-201ENSMUST00000117897 397 ntBASIC13.42□□□□□ -0.26
Ift88Q61371 Gm14999-201ENSMUST00000121039 624 ntBASIC13.42□□□□□ -0.26
Ift88Q61371 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC13.42□□□□□ -0.26
Ift88Q61371 Gm12167-201ENSMUST00000148132 578 ntTSL 2 BASIC13.42□□□□□ -0.26
Ift88Q61371 Gm25261-201ENSMUST00000157416 134 ntBASIC13.42□□□□□ -0.26
Ift88Q61371 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 Sp100-213ENSMUST00000155094 1666 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC13.42□□□□□ -0.26
Ift88Q61371 Rad23a-201ENSMUST00000003911 2074 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 AC093022.4-203ENSMUST00000228523 2657 ntBASIC13.42□□□□□ -0.26
Ift88Q61371 Gm28036-202ENSMUST00000132494 5505 ntAPPRIS P5 TSL 2 BASIC13.42□□□□□ -0.26
Ift88Q61371 Pcsk7-209ENSMUST00000216672 3599 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 Pcdhgb7-201ENSMUST00000194928 4713 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 Tmem215-201ENSMUST00000049655 4733 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 Gdap2-201ENSMUST00000029459 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Ift88Q61371 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ift88Q61371 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ift88Q61371 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ift88Q61371 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Ift88Q61371 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Ift88Q61371 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ift88Q61371 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC13.41□□□□□ -0.26
Ift88Q61371 Mbnl2-204ENSMUST00000227012 2390 ntBASIC13.41□□□□□ -0.26
Ift88Q61371 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Ift88Q61371 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
Ift88Q61371 Gm24934-201ENSMUST00000103764 111 ntBASIC13.41□□□□□ -0.26
Ift88Q61371 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Ift88Q61371 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC13.41□□□□□ -0.26
Ift88Q61371 Polr3c-202ENSMUST00000125183 923 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Ift88Q61371 Pisd-ps2-202ENSMUST00000142526 1175 ntBASIC13.41□□□□□ -0.26
Ift88Q61371 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Ift88Q61371 Gm14209-201ENSMUST00000154946 462 ntTSL 5 BASIC13.41□□□□□ -0.26
Ift88Q61371 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
Ift88Q61371 Gm16379-201ENSMUST00000161469 348 ntBASIC13.41□□□□□ -0.26
Ift88Q61371 Ndufaf2-201ENSMUST00000163558 678 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ift88Q61371 Tead1-207ENSMUST00000165036 1248 ntTSL 5 BASIC13.41□□□□□ -0.26
Ift88Q61371 Tead1-212ENSMUST00000171197 1074 ntTSL 5 BASIC13.41□□□□□ -0.26
Ift88Q61371 Stx5a-219ENSMUST00000177373 995 ntTSL 5 BASIC13.41□□□□□ -0.26
Ift88Q61371 1700037F24Rik-201ENSMUST00000181254 973 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Ift88Q61371 1700120C14Rik-202ENSMUST00000187967 391 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Ift88Q61371 Gm8762-201ENSMUST00000193486 339 ntBASIC13.41□□□□□ -0.26
Ift88Q61371 Gm7653-201ENSMUST00000214567 508 ntBASIC13.41□□□□□ -0.26
Ift88Q61371 AC162938.2-203ENSMUST00000216604 1134 ntTSL 5 BASIC13.41□□□□□ -0.26
Ift88Q61371 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC13.41□□□□□ -0.26
Ift88Q61371 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ift88Q61371 Prg2-201ENSMUST00000028467 838 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ift88Q61371 Snora73a-201ENSMUST00000082453 205 ntBASIC13.41□□□□□ -0.26
Ift88Q61371 B230118H07Rik-202ENSMUST00000099682 895 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Ift88Q61371 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ift88Q61371 Arfgap1-201ENSMUST00000029092 2714 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ift88Q61371 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ift88Q61371 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ift88Q61371 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ift88Q61371 Mei1-201ENSMUST00000089178 3974 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Ift88Q61371 Hbs1l-201ENSMUST00000020153 2793 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ift88Q61371 Gm13142-201ENSMUST00000117213 1453 ntBASIC13.41□□□□□ -0.26
Ift88Q61371 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Ift88Q61371 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ift88Q61371 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC13.41□□□□□ -0.26
Ift88Q61371 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Ift88Q61371 Rspry1-201ENSMUST00000060389 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ift88Q61371 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ift88Q61371 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ift88Q61371 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Ift88Q61371 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ift88Q61371 Btbd9-201ENSMUST00000079924 6657 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ift88Q61371 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC13.4□□□□□ -0.26
Ift88Q61371 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ift88Q61371 Pkig-203ENSMUST00000109400 1059 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ift88Q61371 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Ift88Q61371 Mrpl2-203ENSMUST00000113430 991 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
Ift88Q61371 Gm4984-201ENSMUST00000115987 360 ntBASIC13.4□□□□□ -0.26
Ift88Q61371 Pax5-206ENSMUST00000134968 969 ntTSL 5 BASIC13.4□□□□□ -0.26
Ift88Q61371 Gm13570-201ENSMUST00000140763 309 ntBASIC13.4□□□□□ -0.26
Ift88Q61371 Gm24548-201ENSMUST00000158650 108 ntBASIC13.4□□□□□ -0.26
Ift88Q61371 Gm17180-201ENSMUST00000172211 435 ntTSL 3 BASIC13.4□□□□□ -0.26
Ift88Q61371 Gm20416-201ENSMUST00000174760 484 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Ift88Q61371 Gm37201-201ENSMUST00000191845 523 ntBASIC13.4□□□□□ -0.26
Ift88Q61371 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC13.4□□□□□ -0.26
Ift88Q61371 Mrpl30-205ENSMUST00000193673 662 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
Ift88Q61371 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Ift88Q61371 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC13.4□□□□□ -0.26
Ift88Q61371 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 48.6 ms