Protein–RNA interactions for Protein: Q61069

Usf1, Upstream stimulatory factor 1, mousemouse

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usf1Q61069 Actr8-204ENSMUST00000224797 2328 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
Usf1Q61069 Wasl-201ENSMUST00000031695 4352 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Usf1Q61069 Gm3765-201ENSMUST00000130985 1447 ntBASIC11.08□□□□□ -0.64
Usf1Q61069 Gm8617-201ENSMUST00000118796 2222 ntBASIC11.08□□□□□ -0.64
Usf1Q61069 Prss36-202ENSMUST00000118755 3028 ntAPPRIS P2 TSL 5 BASIC11.08□□□□□ -0.64
Usf1Q61069 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
Usf1Q61069 Desi1-206ENSMUST00000152227 2934 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Usf1Q61069 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
Usf1Q61069 Nek8-201ENSMUST00000017549 2809 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
Usf1Q61069 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 D930019O06Rik-201ENSMUST00000181841 3663 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 Gm34006-202ENSMUST00000216467 1918 ntTSL 2 BASIC11.07□□□□□ -0.64
Usf1Q61069 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 Samd11-202ENSMUST00000217934 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC11.07□□□□□ -0.64
Usf1Q61069 AC173482.6-201ENSMUST00000225889 1741 ntBASIC11.07□□□□□ -0.64
Usf1Q61069 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 Atxn2l-201ENSMUST00000040202 3853 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 Afdn-216ENSMUST00000170827 7338 ntAPPRIS ALT2 TSL 5 BASIC11.07□□□□□ -0.64
Usf1Q61069 Flrt1-201ENSMUST00000113383 5859 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 Gm22920-201ENSMUST00000102175 109 ntBASIC11.07□□□□□ -0.64
Usf1Q61069 Map2k7-205ENSMUST00000110996 1188 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 Gm11660-201ENSMUST00000120955 412 ntBASIC11.07□□□□□ -0.64
Usf1Q61069 Gm15619-201ENSMUST00000128415 1294 ntTSL 3 BASIC11.07□□□□□ -0.64
Usf1Q61069 Prss36-208ENSMUST00000156152 1132 ntTSL 5 BASIC11.07□□□□□ -0.64
Usf1Q61069 Gm22877-201ENSMUST00000175451 105 ntBASIC11.07□□□□□ -0.64
Usf1Q61069 Gm42657-201ENSMUST00000201746 211 ntBASIC11.07□□□□□ -0.64
Usf1Q61069 Gm44270-201ENSMUST00000203084 1234 ntBASIC11.07□□□□□ -0.64
Usf1Q61069 Kcnk16-202ENSMUST00000225596 2127 ntBASIC11.07□□□□□ -0.64
Usf1Q61069 AC122350.1-201ENSMUST00000228135 533 ntBASIC11.07□□□□□ -0.64
Usf1Q61069 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 Gm9962-201ENSMUST00000085241 321 ntTSL 5 BASIC11.07□□□□□ -0.64
Usf1Q61069 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 Clcnkb-201ENSMUST00000006378 2370 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 Gm7114-201ENSMUST00000190159 1789 ntBASIC11.07□□□□□ -0.64
Usf1Q61069 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 AC154262.2-201ENSMUST00000224310 2293 ntBASIC11.07□□□□□ -0.64
Usf1Q61069 Gm7537-201ENSMUST00000221660 1414 ntBASIC11.07□□□□□ -0.64
Usf1Q61069 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 Hnrnpf-210ENSMUST00000180341 1922 ntAPPRIS P1 BASIC11.07□□□□□ -0.64
Usf1Q61069 Metap2-206ENSMUST00000180840 2551 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC11.07□□□□□ -0.64
Usf1Q61069 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Usf1Q61069 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 Zfp207-201ENSMUST00000017567 2245 ntAPPRIS ALT1 TSL 1 (best) BASIC11.07□□□□□ -0.64
Usf1Q61069 Ctif-201ENSMUST00000165559 6173 ntAPPRIS P1 TSL 5 BASIC11.07□□□□□ -0.64
Usf1Q61069 Aph1a-201ENSMUST00000015894 2863 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Gm26905-201ENSMUST00000180798 6621 ntTSL 5 BASIC11.06□□□□□ -0.64
Usf1Q61069 Erg-203ENSMUST00000113848 2139 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Tmem41b-201ENSMUST00000094097 3840 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
Usf1Q61069 Arid5a-204ENSMUST00000115032 4640 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC11.06□□□□□ -0.64
Usf1Q61069 Cacna1b-203ENSMUST00000100348 7182 ntAPPRIS ALT2 TSL 5 BASIC11.06□□□□□ -0.64
Usf1Q61069 Rcbtb2-202ENSMUST00000110952 2176 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Olfr71-202ENSMUST00000107862 2587 ntAPPRIS P1 TSL 3 BASIC11.06□□□□□ -0.64
Usf1Q61069 Rp2-201ENSMUST00000033372 4417 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Syt1-202ENSMUST00000105276 4820 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Tcf25-201ENSMUST00000057934 2738 ntAPPRIS P3 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC11.06□□□□□ -0.64
Usf1Q61069 Zfp286-211ENSMUST00000207597 1668 ntTSL 5 BASIC11.06□□□□□ -0.64
Usf1Q61069 Ighv10-1-201ENSMUST00000103492 359 ntAPPRIS P1 BASIC11.06□□□□□ -0.64
Usf1Q61069 Gm26013-201ENSMUST00000104404 119 ntBASIC11.06□□□□□ -0.64
Usf1Q61069 Gm13600-201ENSMUST00000117949 744 ntBASIC11.06□□□□□ -0.64
Usf1Q61069 Gm13668-201ENSMUST00000119237 1001 ntBASIC11.06□□□□□ -0.64
Usf1Q61069 Gm18159-201ENSMUST00000174516 1070 ntBASIC11.06□□□□□ -0.64
Usf1Q61069 Dpf3-206ENSMUST00000177959 1298 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Gm28388-201ENSMUST00000186262 437 ntBASIC11.06□□□□□ -0.64
Usf1Q61069 Gm44421-201ENSMUST00000205064 1221 ntBASIC11.06□□□□□ -0.64
Usf1Q61069 Gm45717-201ENSMUST00000211129 495 ntAPPRIS P1 TSL 3 BASIC11.06□□□□□ -0.64
Usf1Q61069 CT485606.1-201ENSMUST00000213187 878 ntBASIC11.06□□□□□ -0.64
Usf1Q61069 Gm18636-201ENSMUST00000218846 1066 ntBASIC11.06□□□□□ -0.64
Usf1Q61069 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Grhl2-201ENSMUST00000022895 4947 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Rad9b-202ENSMUST00000117263 2371 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Phkg1-201ENSMUST00000026617 2374 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Spata5-209ENSMUST00000198968 2916 ntAPPRIS ALT2 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Parp16-202ENSMUST00000213396 2518 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC11.06□□□□□ -0.64
Usf1Q61069 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC11.06□□□□□ -0.64
Usf1Q61069 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC11.06□□□□□ -0.64
Usf1Q61069 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.06□□□□□ -0.64
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms