Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Myh13-202ENSMUST00000108684 6062 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
Upf3aQ3ULJ3 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3aQ3ULJ3 Slc5a11-201ENSMUST00000033035 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3aQ3ULJ3 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3aQ3ULJ3 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3aQ3ULJ3 Atp6v1b1-201ENSMUST00000006431 1999 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3aQ3ULJ3 Rnf214-201ENSMUST00000058720 3964 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3aQ3ULJ3 Cacna1c-225ENSMUST00000219223 7483 ntTSL 5 BASIC12.78□□□□□ -0.36
Upf3aQ3ULJ3 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3aQ3ULJ3 Oxr1-203ENSMUST00000090096 4515 ntTSL 5 BASIC12.78□□□□□ -0.36
Upf3aQ3ULJ3 Tulp2-202ENSMUST00000085331 1525 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Upf3aQ3ULJ3 Lig3-202ENSMUST00000080461 3056 ntTSL 5 BASIC12.77□□□□□ -0.36
Upf3aQ3ULJ3 Kctd11-201ENSMUST00000050555 3146 ntAPPRIS P1 BASIC12.77□□□□□ -0.36
Upf3aQ3ULJ3 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Upf3aQ3ULJ3 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Upf3aQ3ULJ3 D6Ertd527e-203ENSMUST00000203747 2216 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Upf3aQ3ULJ3 Dab2ip-205ENSMUST00000112986 5580 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.36
Upf3aQ3ULJ3 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Upf3aQ3ULJ3 Unc13a-201ENSMUST00000030170 10255 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.36
Upf3aQ3ULJ3 Pgr-204ENSMUST00000189181 6889 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Upf3aQ3ULJ3 Tor1aip2-207ENSMUST00000128941 2925 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Upf3aQ3ULJ3 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Upf3aQ3ULJ3 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Upf3aQ3ULJ3 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Upf3aQ3ULJ3 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 1700128E19Rik-201ENSMUST00000134409 2439 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Adgrg3-201ENSMUST00000051259 2439 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Gm15566-201ENSMUST00000121130 590 ntBASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Gm13391-202ENSMUST00000147685 816 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Gm9358-201ENSMUST00000183067 927 ntBASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Pex1-208ENSMUST00000195894 528 ntTSL 3 BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 2010001M07Rik-201ENSMUST00000214235 364 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Gm34045-201ENSMUST00000217700 988 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Olfr354-201ENSMUST00000068475 1084 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Anapc11-201ENSMUST00000026128 3229 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Ano1-201ENSMUST00000033393 4585 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Zbtb49-202ENSMUST00000114113 2645 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Lin37-202ENSMUST00000108164 1312 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Osbpl1a-201ENSMUST00000074352 3956 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 Kalrn-209ENSMUST00000114963 3207 ntTSL 5 BASIC12.77□□□□□ -0.37
Upf3aQ3ULJ3 AC158355.1-201ENSMUST00000215895 1705 ntBASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Otub2-201ENSMUST00000021620 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Flcn-202ENSMUST00000091246 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Aqr-201ENSMUST00000043160 4888 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Gnb1l-211ENSMUST00000167778 3569 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Gm8737-201ENSMUST00000122208 642 ntBASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Gm22138-201ENSMUST00000158748 128 ntBASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Gm23771-201ENSMUST00000178702 110 ntBASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Smlr1-201ENSMUST00000179685 669 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Mir8115-201ENSMUST00000184992 119 ntBASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Gm2517-201ENSMUST00000215651 348 ntBASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Mrpl30-201ENSMUST00000027256 969 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Hist1h1b-201ENSMUST00000080511 743 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Lce1e-201ENSMUST00000090867 711 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Folr1-203ENSMUST00000106983 1307 ntAPPRIS P1 TSL 5 BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Epb41l5-208ENSMUST00000191046 6870 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Slc6a21-201ENSMUST00000085364 1732 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Sec61g-203ENSMUST00000109643 1862 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Cldn15-201ENSMUST00000001790 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Pja1-201ENSMUST00000036354 2563 ntAPPRIS P4 TSL 1 (best) BASIC12.76□□□□□ -0.37
Upf3aQ3ULJ3 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3aQ3ULJ3 Chrdl1-203ENSMUST00000112878 4050 ntAPPRIS ALT2 TSL 5 BASIC12.75□□□□□ -0.37
Upf3aQ3ULJ3 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3aQ3ULJ3 Gm14193-201ENSMUST00000105067 153 ntBASIC12.75□□□□□ -0.37
Upf3aQ3ULJ3 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3aQ3ULJ3 Gm11892-201ENSMUST00000117711 1202 ntBASIC12.75□□□□□ -0.37
Upf3aQ3ULJ3 Gm12579-201ENSMUST00000118040 783 ntBASIC12.75□□□□□ -0.37
Upf3aQ3ULJ3 Gm8731-201ENSMUST00000118088 412 ntBASIC12.75□□□□□ -0.37
Upf3aQ3ULJ3 Gm13910-201ENSMUST00000121752 1428 ntBASIC12.75□□□□□ -0.37
Upf3aQ3ULJ3 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3aQ3ULJ3 Tmem190-201ENSMUST00000013235 589 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
Upf3aQ3ULJ3 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms