Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Lrp1-203ENSMUST00000121829 2887 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Rnf180-205ENSMUST00000226044 3279 ntAPPRIS ALT2 BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Col28a1Q2UY11 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Serpinb13-201ENSMUST00000027564 1607 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Phyhd1-212ENSMUST00000154647 1678 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Slc2a4-201ENSMUST00000018710 2524 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Gypa-201ENSMUST00000063359 1848 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Ppih-203ENSMUST00000106318 800 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Agbl3-202ENSMUST00000115012 790 ntTSL 3 BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Agbl3-203ENSMUST00000115014 805 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Thoc6-204ENSMUST00000115490 1157 ntTSL 5 BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Mad2l1bp-201ENSMUST00000171172 1269 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Gm2164-201ENSMUST00000184062 424 ntTSL 2 BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Gm26728-201ENSMUST00000185268 595 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Gm28511-201ENSMUST00000191594 450 ntTSL 3 BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Myl10-203ENSMUST00000196436 598 ntTSL 3 BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Gm43118-201ENSMUST00000199149 775 ntBASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Gm33474-201ENSMUST00000199486 1231 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 1110006O24Rik-201ENSMUST00000201728 768 ntBASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Csrnp1-204ENSMUST00000215916 2956 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 AC159747.1-201ENSMUST00000219903 265 ntBASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Gm36264-202ENSMUST00000221989 1142 ntTSL 5 BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 AC133598.1-201ENSMUST00000224327 660 ntBASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Gm24136-201ENSMUST00000083374 165 ntBASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Pcca-201ENSMUST00000038374 2592 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Erich1-201ENSMUST00000110813 1557 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Krba1-202ENSMUST00000077093 8380 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Gucy2e-203ENSMUST00000108665 3645 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Art3-204ENSMUST00000119587 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Krt40-201ENSMUST00000074253 1320 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Tfdp2-204ENSMUST00000179065 2213 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Col28a1Q2UY11 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Aff3-202ENSMUST00000039827 6010 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Gm26599-201ENSMUST00000180590 3189 ntTSL 5 BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Sez6l2-201ENSMUST00000106332 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Rit2-203ENSMUST00000153060 1806 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Gucy1a3-204ENSMUST00000193924 4710 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Col18a1-203ENSMUST00000105409 4791 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Olfr222-203ENSMUST00000215339 2166 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Gm13848-202ENSMUST00000211663 1560 ntTSL 5 BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Dysf-216ENSMUST00000204987 6474 ntAPPRIS ALT2 TSL 5 BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Gm14508-201ENSMUST00000127049 901 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Gm16124-201ENSMUST00000146938 516 ntTSL 2 BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Crb3-204ENSMUST00000163763 868 ntAPPRIS P3 TSL 2 BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Gm4857-201ENSMUST00000192718 785 ntBASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Mien1-201ENSMUST00000002655 747 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Gm11563-201ENSMUST00000092695 1012 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Gm19692-201ENSMUST00000203856 2084 ntBASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Trpc6-201ENSMUST00000050433 3259 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Fpr1-201ENSMUST00000061516 1324 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Fn3krp-201ENSMUST00000038096 2520 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Acad8-201ENSMUST00000060513 2859 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
Col28a1Q2UY11 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 D130043K22Rik-201ENSMUST00000006893 4973 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Tjp3-205ENSMUST00000219479 2901 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Med8-204ENSMUST00000106384 1743 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Pabpc4-204ENSMUST00000106243 3111 ntAPPRIS ALT1 TSL 5 BASIC11.8□□□□□ -0.52
Col28a1Q2UY11 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 48.3 ms