Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Col9a1Q05722 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col9a1Q05722 Prrg4-201ENSMUST00000028593 2872 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col9a1Q05722 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col9a1Q05722 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col9a1Q05722 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col9a1Q05722 Ccdc121-201ENSMUST00000058825 1819 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Col9a1Q05722 Gm28230-201ENSMUST00000053932 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Col9a1Q05722 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC12.22□□□□□ -0.45
Col9a1Q05722 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Ate1-204ENSMUST00000178534 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Col9a1Q05722 Slc25a21-205ENSMUST00000217690 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 AC153524.2-201ENSMUST00000218351 1375 ntTSL 5 BASIC12.22□□□□□ -0.45
Col9a1Q05722 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Gm15394-201ENSMUST00000119656 1308 ntBASIC12.22□□□□□ -0.45
Col9a1Q05722 BB019430-202ENSMUST00000218015 1320 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Gm13055-201ENSMUST00000127875 1961 ntTSL 5 BASIC12.22□□□□□ -0.45
Col9a1Q05722 Mir705-201ENSMUST00000102058 82 ntBASIC12.22□□□□□ -0.45
Col9a1Q05722 Lyrm1-202ENSMUST00000106516 1069 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Crygf-202ENSMUST00000114027 594 ntTSL 2 BASIC12.22□□□□□ -0.45
Col9a1Q05722 Rps10-202ENSMUST00000114881 604 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
Col9a1Q05722 Gm11485-201ENSMUST00000120048 1175 ntBASIC12.22□□□□□ -0.45
Col9a1Q05722 Gm12000-201ENSMUST00000132007 629 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 2810403D21Rik-204ENSMUST00000144421 747 ntTSL 3 BASIC12.22□□□□□ -0.45
Col9a1Q05722 2410124H12Rik-201ENSMUST00000160494 706 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Ccndbp1-208ENSMUST00000171260 1187 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
Col9a1Q05722 Gm26134-201ENSMUST00000178484 110 ntBASIC12.22□□□□□ -0.45
Col9a1Q05722 Krtap22-2-201ENSMUST00000178913 380 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Col9a1Q05722 Gm5066-201ENSMUST00000188479 822 ntBASIC12.22□□□□□ -0.45
Col9a1Q05722 A630035G10Rik-202ENSMUST00000194468 1065 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Gm36997-201ENSMUST00000195090 707 ntBASIC12.22□□□□□ -0.45
Col9a1Q05722 Gm37724-201ENSMUST00000195240 1221 ntBASIC12.22□□□□□ -0.45
Col9a1Q05722 Smr2-202ENSMUST00000196070 813 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Gm43912-201ENSMUST00000204352 538 ntBASIC12.22□□□□□ -0.45
Col9a1Q05722 Gm39090-202ENSMUST00000205992 508 ntTSL 5 BASIC12.22□□□□□ -0.45
Col9a1Q05722 Kcne3-206ENSMUST00000207995 439 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
Col9a1Q05722 Gm45636-201ENSMUST00000210497 1064 ntBASIC12.22□□□□□ -0.45
Col9a1Q05722 Gm5907-202ENSMUST00000210969 661 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Aoah-202ENSMUST00000221982 919 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 AC165260.3-201ENSMUST00000225101 665 ntBASIC12.22□□□□□ -0.45
Col9a1Q05722 AC158142.3-201ENSMUST00000226230 675 ntBASIC12.22□□□□□ -0.45
Col9a1Q05722 Mitd1-201ENSMUST00000027257 1231 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Eqtn-201ENSMUST00000030309 1074 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Gpr87-201ENSMUST00000056898 1080 ntBASIC12.22□□□□□ -0.45
Col9a1Q05722 n-R5s185-201ENSMUST00000083953 119 ntBASIC12.22□□□□□ -0.45
Col9a1Q05722 Rps18-201ENSMUST00000008812 600 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Trp53-203ENSMUST00000108658 1771 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Trp53-201ENSMUST00000005371 1772 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
Col9a1Q05722 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Lnx1-205ENSMUST00000117525 2259 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC12.22□□□□□ -0.45
Col9a1Q05722 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Mbp-207ENSMUST00000114674 2108 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC12.22□□□□□ -0.45
Col9a1Q05722 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
Col9a1Q05722 Phldb1-212ENSMUST00000138356 5600 ntTSL 5 BASIC12.22□□□□□ -0.45
Col9a1Q05722 Cdc42ep1-201ENSMUST00000059619 2542 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col9a1Q05722 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col9a1Q05722 Serpinb2-201ENSMUST00000009356 1970 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col9a1Q05722 Ahsg-201ENSMUST00000023583 1474 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col9a1Q05722 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col9a1Q05722 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col9a1Q05722 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col9a1Q05722 Dnm1-204ENSMUST00000113352 4605 ntAPPRIS ALT1 TSL 2 BASIC12.21□□□□□ -0.45
Col9a1Q05722 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC12.21□□□□□ -0.45
Col9a1Q05722 Th-201ENSMUST00000000219 1829 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col9a1Q05722 Nck1-202ENSMUST00000116522 4476 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col9a1Q05722 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col9a1Q05722 Mark2-201ENSMUST00000025921 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Col9a1Q05722 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC12.21□□□□□ -0.45
Col9a1Q05722 Gm25317-201ENSMUST00000116824 129 ntBASIC12.21□□□□□ -0.45
Col9a1Q05722 Gm12470-201ENSMUST00000117239 1049 ntBASIC12.21□□□□□ -0.45
Col9a1Q05722 Gm12857-201ENSMUST00000117678 592 ntBASIC12.21□□□□□ -0.45
Col9a1Q05722 Cdk1-202ENSMUST00000119827 1253 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Col9a1Q05722 Gm13674-201ENSMUST00000121276 823 ntBASIC12.21□□□□□ -0.45
Col9a1Q05722 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC12.21□□□□□ -0.45
Col9a1Q05722 Cox7c-204ENSMUST00000132233 709 ntTSL 2 BASIC12.21□□□□□ -0.45
Col9a1Q05722 1700123M08Rik-202ENSMUST00000146154 770 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Col9a1Q05722 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Col9a1Q05722 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC12.21□□□□□ -0.45
Col9a1Q05722 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC12.21□□□□□ -0.45
Col9a1Q05722 Gm27861-201ENSMUST00000183920 214 ntBASIC12.21□□□□□ -0.45
Col9a1Q05722 Mir7088-201ENSMUST00000184227 86 ntBASIC12.21□□□□□ -0.45
Col9a1Q05722 1700088E04Rik-207ENSMUST00000188562 631 ntTSL 3 BASIC12.21□□□□□ -0.45
Col9a1Q05722 Gm38103-201ENSMUST00000191707 864 ntBASIC12.21□□□□□ -0.45
Col9a1Q05722 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC12.21□□□□□ -0.45
Col9a1Q05722 Gm42438-201ENSMUST00000197832 974 ntBASIC12.21□□□□□ -0.45
Col9a1Q05722 D530037P16Rik-201ENSMUST00000199255 1027 ntBASIC12.21□□□□□ -0.45
Col9a1Q05722 Ighv8-10-201ENSMUST00000199579 358 ntBASIC12.21□□□□□ -0.45
Col9a1Q05722 6030400A10Rik-201ENSMUST00000199734 1212 ntBASIC12.21□□□□□ -0.45
Col9a1Q05722 A730082K24Rik-201ENSMUST00000205365 465 ntTSL 3 BASIC12.21□□□□□ -0.45
Col9a1Q05722 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
Col9a1Q05722 Gm45758-201ENSMUST00000212448 1006 ntBASIC12.21□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms