Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 2810429I04Rik-203ENSMUST00000181708 4769 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Rnps1-201ENSMUST00000088512 1798 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 4933421I07Rik-201ENSMUST00000032648 1413 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Usp19-210ENSMUST00000193678 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Lig3P97386 Calcr-204ENSMUST00000170266 2175 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC13.33□□□□□ -0.28
Lig3P97386 Strip2-205ENSMUST00000151738 5281 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Vamp5-202ENSMUST00000101285 623 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Gm13996-201ENSMUST00000118456 430 ntBASIC13.33□□□□□ -0.28
Lig3P97386 Nmb-202ENSMUST00000119428 678 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
Lig3P97386 Gm8566-201ENSMUST00000120174 465 ntBASIC13.33□□□□□ -0.28
Lig3P97386 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Gm14051-201ENSMUST00000131603 377 ntTSL 3 BASIC13.33□□□□□ -0.28
Lig3P97386 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC13.33□□□□□ -0.28
Lig3P97386 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC13.33□□□□□ -0.28
Lig3P97386 Apoe-208ENSMUST00000174191 472 ntTSL 2 BASIC13.33□□□□□ -0.28
Lig3P97386 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC13.33□□□□□ -0.28
Lig3P97386 Pmvk-203ENSMUST00000184515 1156 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Gm44136-201ENSMUST00000203819 1106 ntBASIC13.33□□□□□ -0.28
Lig3P97386 Gm6458-201ENSMUST00000211573 635 ntBASIC13.33□□□□□ -0.28
Lig3P97386 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 AC140293.1-201ENSMUST00000225626 1247 ntBASIC13.33□□□□□ -0.28
Lig3P97386 AC131330.1-201ENSMUST00000227814 1015 ntBASIC13.33□□□□□ -0.28
Lig3P97386 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Lig3P97386 Rnf223-201ENSMUST00000209248 2908 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
Lig3P97386 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
Lig3P97386 Xkr8-201ENSMUST00000045550 4245 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Lig3P97386 Asl-203ENSMUST00000160129 2413 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Lig3P97386 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Gm10392-201ENSMUST00000100807 1732 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
Lig3P97386 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Tbc1d1-202ENSMUST00000101195 5432 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Lig3P97386 Gm8994-202ENSMUST00000204530 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lig3P97386 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lig3P97386 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lig3P97386 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Lig3P97386 Pik3cd-206ENSMUST00000122059 4832 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lig3P97386 Cyb561d1-203ENSMUST00000106655 4275 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lig3P97386 Pfkp-201ENSMUST00000021614 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lig3P97386 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lig3P97386 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
Lig3P97386 Gprc5a-201ENSMUST00000050104 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lig3P97386 Rin2-202ENSMUST00000110005 4641 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Lig3P97386 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lig3P97386 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lig3P97386 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Lig3P97386 Oaz2-ps-201ENSMUST00000121735 537 ntBASIC13.32□□□□□ -0.28
Lig3P97386 Gm12208-201ENSMUST00000122004 163 ntBASIC13.32□□□□□ -0.28
Lig3P97386 Tex22-201ENSMUST00000012355 1267 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lig3P97386 Pabpc1l2a-ps-201ENSMUST00000128361 513 ntBASIC13.32□□□□□ -0.28
Lig3P97386 1700003G13Rik-202ENSMUST00000131342 705 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Lig3P97386 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC13.32□□□□□ -0.28
Lig3P97386 3830422I06Rik-201ENSMUST00000200199 1181 ntBASIC13.32□□□□□ -0.28
Lig3P97386 Timm9-201ENSMUST00000021486 794 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lig3P97386 AC093022.5-201ENSMUST00000226841 1079 ntBASIC13.32□□□□□ -0.28
Lig3P97386 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lig3P97386 Adm2-201ENSMUST00000066991 1043 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lig3P97386 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC13.32□□□□□ -0.28
Lig3P97386 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
Lig3P97386 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lig3P97386 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC13.32□□□□□ -0.28
Lig3P97386 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC13.32□□□□□ -0.28
Lig3P97386 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Lig3P97386 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lig3P97386 Xrra1-202ENSMUST00000207855 1334 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Lig3P97386 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Lig3P97386 Map4-205ENSMUST00000165876 5573 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Lig3P97386 Cpa1-201ENSMUST00000031806 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Lig3P97386 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Lig3P97386 Ngly1-207ENSMUST00000224656 2329 ntAPPRIS ALT2 BASIC13.31□□□□□ -0.28
Lig3P97386 Pcnt-202ENSMUST00000217838 9341 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lig3P97386 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lig3P97386 A430057M04Rik-201ENSMUST00000169054 3835 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Lig3P97386 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC13.31□□□□□ -0.28
Lig3P97386 Rapgef3-217ENSMUST00000177352 3395 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
Lig3P97386 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
Lig3P97386 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
Lig3P97386 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lig3P97386 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lig3P97386 Wasf2-202ENSMUST00000105912 2236 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lig3P97386 Slc29a1-204ENSMUST00000163492 2216 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lig3P97386 Zscan29-201ENSMUST00000079024 2465 ntTSL 5 BASIC13.31□□□□□ -0.28
Lig3P97386 Git1-201ENSMUST00000037285 3512 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Lig3P97386 Mixl1-201ENSMUST00000027778 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 42 ms