Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Telo2-202ENSMUST00000115181 3530 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
Pcdh1F7BJK1 Gm15987-201ENSMUST00000141700 2231 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 AC124397.2-201ENSMUST00000225575 2215 ntBASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Gm15587-201ENSMUST00000146326 3493 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Bdnf-205ENSMUST00000111045 3973 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 CT010488.1-201ENSMUST00000214890 1522 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Gm24830-201ENSMUST00000102024 166 ntBASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Ppcs-202ENSMUST00000106316 954 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Gm26721-201ENSMUST00000181723 992 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Mymx-204ENSMUST00000208801 437 ntAPPRIS ALT2 TSL 2 BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Gm5035-201ENSMUST00000215581 927 ntBASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Tatdn3-201ENSMUST00000027945 1196 ntAPPRIS ALT2 TSL 3 BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Gm26232-201ENSMUST00000083360 166 ntBASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Rnu1b6-201ENSMUST00000083839 166 ntBASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Lrrn1-201ENSMUST00000049285 3700 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Olfr1344-202ENSMUST00000218906 2590 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 6430571L13Rik-201ENSMUST00000042581 2599 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Pcgf2-207ENSMUST00000179765 2485 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Gm43447-201ENSMUST00000198471 1535 ntBASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Mfsd4b5-203ENSMUST00000164566 2372 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC10.94□□□□□ -0.66
Pcdh1F7BJK1 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Cldn18-204ENSMUST00000136429 1409 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Grpel2-201ENSMUST00000062991 4030 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Wbp1l-201ENSMUST00000099376 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 5033428I22Rik-201ENSMUST00000181638 2040 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Gm15172-201ENSMUST00000118945 1046 ntBASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Med28-203ENSMUST00000119579 636 ntTSL 3 BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Asb1-205ENSMUST00000188081 1272 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 AC125209.1-201ENSMUST00000225812 766 ntBASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 AC126253.1-202ENSMUST00000226732 835 ntBASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Cd37-201ENSMUST00000033063 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Gm10570-201ENSMUST00000097865 513 ntAPPRIS P1 BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Cd37-202ENSMUST00000098461 1227 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Ltbp2-202ENSMUST00000110254 6602 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Kcnma1-212ENSMUST00000188285 4440 ntAPPRIS P4 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Syt16-203ENSMUST00000221220 8156 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Gucy2e-203ENSMUST00000108665 3645 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Uimc1-201ENSMUST00000026997 2931 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Lcp2-202ENSMUST00000109329 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Rps6ka6-202ENSMUST00000082034 4170 ntAPPRIS P2 TSL 5 BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Rnf214-208ENSMUST00000161187 2847 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
Pcdh1F7BJK1 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Pcdh1F7BJK1 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Pcdh1F7BJK1 Ccnt1-208ENSMUST00000169707 7397 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Pcdh1F7BJK1 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Pcdh1F7BJK1 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Pcdh1F7BJK1 Arvcf-204ENSMUST00000115613 4800 ntAPPRIS P3 TSL 5 BASIC10.92□□□□□ -0.66
Pcdh1F7BJK1 Ifi47-204ENSMUST00000213728 1678 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
Pcdh1F7BJK1 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC10.92□□□□□ -0.66
Pcdh1F7BJK1 Kifc2-201ENSMUST00000004294 3143 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 47.3 ms