Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Gm4760-201ENSMUST00000119663 1030 ntBASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Gm15869-201ENSMUST00000126427 734 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Gm13165-201ENSMUST00000152923 383 ntTSL 5 BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Gm9230-201ENSMUST00000188228 532 ntBASIC12.5□□□□□ -0.41
Vps28Q9D1C8 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Gm35409-201ENSMUST00000196412 1102 ntTSL 5 BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Polr2i-201ENSMUST00000019882 819 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Gm36503-201ENSMUST00000204284 875 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Gm32850-202ENSMUST00000209149 732 ntTSL 5 BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Gm45598-202ENSMUST00000210719 986 ntBASIC12.5□□□□□ -0.41
Vps28Q9D1C8 AC163667.3-201ENSMUST00000225774 222 ntBASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Hsd17b10-201ENSMUST00000026289 962 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Dnajc17-201ENSMUST00000038439 1008 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Crry-ps-201ENSMUST00000079090 1309 ntBASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Cd79a-201ENSMUST00000003469 1457 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Mettl8-202ENSMUST00000100037 2254 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Ildr1-203ENSMUST00000119464 2878 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Tmem230-203ENSMUST00000110164 2957 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Vps28Q9D1C8 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Dlg4-203ENSMUST00000108588 3457 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Bcar3-201ENSMUST00000029766 3311 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Dgcr2-203ENSMUST00000117082 2987 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Gm44806-201ENSMUST00000205574 2303 ntBASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Serpinf2-202ENSMUST00000108437 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Thrb-203ENSMUST00000091471 1758 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Krt31-201ENSMUST00000007318 1581 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Tmem30c-202ENSMUST00000119407 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Cryba4-203ENSMUST00000112385 808 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Dixdc1-204ENSMUST00000118707 989 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Gm32999-201ENSMUST00000192693 562 ntBASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Gm44262-201ENSMUST00000204969 372 ntBASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Gm45224-201ENSMUST00000208203 414 ntBASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Caly-204ENSMUST00000211283 975 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Gm33104-201ENSMUST00000214178 1010 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Rab13-201ENSMUST00000065418 1107 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Ibtk-201ENSMUST00000039213 5650 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Spast-201ENSMUST00000024869 4672 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Tmx2-203ENSMUST00000111665 2282 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Gm43061-201ENSMUST00000198850 2241 ntBASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Unk-202ENSMUST00000106452 3696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Trmt1-204ENSMUST00000109768 2044 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Fam214b-203ENSMUST00000107957 3234 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Vps28Q9D1C8 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Vps28Q9D1C8 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Vps28Q9D1C8 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Vps28Q9D1C8 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Vps28Q9D1C8 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Vps28Q9D1C8 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Vps28Q9D1C8 Nxph1-201ENSMUST00000060369 2578 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Vps28Q9D1C8 Ncapd3-201ENSMUST00000073127 5499 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
Vps28Q9D1C8 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Vps28Q9D1C8 Nemp1-203ENSMUST00000118728 2362 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Vps28Q9D1C8 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Vps28Q9D1C8 Olfr1420-201ENSMUST00000072784 1444 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
Vps28Q9D1C8 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC12.48□□□□□ -0.41
Vps28Q9D1C8 Ptprr-204ENSMUST00000128399 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Vps28Q9D1C8 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC12.48□□□□□ -0.41
Vps28Q9D1C8 Gm14017-201ENSMUST00000121934 386 ntBASIC12.48□□□□□ -0.41
Vps28Q9D1C8 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Vps28Q9D1C8 F630206G17Rik-201ENSMUST00000137002 685 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Vps28Q9D1C8 Ftl1-ps2-201ENSMUST00000169477 549 ntBASIC12.48□□□□□ -0.41
Vps28Q9D1C8 Gm7619-201ENSMUST00000210649 1282 ntBASIC12.48□□□□□ -0.41
Vps28Q9D1C8 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Vps28Q9D1C8 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC12.48□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms