Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Trim45-201ENSMUST00000037409 4612 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Ddx28Q9CWT6 Nrros-202ENSMUST00000115163 3559 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.58
Ddx28Q9CWT6 Apold1-201ENSMUST00000167323 3567 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.58
Ddx28Q9CWT6 Gm45897-201ENSMUST00000212679 1998 ntTSL 5 BASIC11.46□□□□□ -0.58
Ddx28Q9CWT6 Fntb-201ENSMUST00000041008 2613 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Ddx28Q9CWT6 Hap1-202ENSMUST00000138603 3316 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.58
Ddx28Q9CWT6 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Ddx28Q9CWT6 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Ddx28Q9CWT6 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Ddx28Q9CWT6 E230020A03Rik-201ENSMUST00000194646 2386 ntBASIC11.46□□□□□ -0.58
Ddx28Q9CWT6 Sp2-202ENSMUST00000107623 2907 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Ddx28Q9CWT6 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Ddx28Q9CWT6 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Zfp462-202ENSMUST00000079605 4684 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Gm45266-201ENSMUST00000210111 2173 ntBASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Rgs20-202ENSMUST00000118000 2125 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Ddx55-202ENSMUST00000111438 2737 ntTSL 2 BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Gm44758-201ENSMUST00000206096 2068 ntBASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Sirt3-201ENSMUST00000026559 1461 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Prkag3-202ENSMUST00000113672 2003 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Fubp1-209ENSMUST00000198227 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Gm26811-201ENSMUST00000181258 5485 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Bcl2l15-202ENSMUST00000106822 1902 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Bst2-201ENSMUST00000051672 792 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Brsk2-216ENSMUST00000174499 4223 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Gm20427-201ENSMUST00000168978 3703 ntTSL 2 BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 4930428O21Rik-201ENSMUST00000198537 1740 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Slc38a3-202ENSMUST00000167868 3151 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Slc6a2-202ENSMUST00000165470 6007 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Tmem140-201ENSMUST00000074949 2614 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 1810014B01Rik-202ENSMUST00000218095 1622 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 AC159195.1-201ENSMUST00000225867 2086 ntBASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Topors-201ENSMUST00000042575 3856 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Pex2-206ENSMUST00000195855 1587 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Pcdhb2-201ENSMUST00000056522 2813 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Kif2c-202ENSMUST00000106436 2378 ntAPPRIS ALT2 TSL 5 BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Nfic-203ENSMUST00000105321 6237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Ddx28Q9CWT6 Gm44775-201ENSMUST00000207266 1456 ntBASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Gmppb-202ENSMUST00000112295 2702 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Amotl1-201ENSMUST00000013220 8957 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Gm30725-201ENSMUST00000195170 1419 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Bcl2l14-201ENSMUST00000032321 2243 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Pdp1-205ENSMUST00000108301 2635 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Pmaip1-201ENSMUST00000025399 2646 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Gm4869-201ENSMUST00000197549 2955 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Gm2128-201ENSMUST00000108009 2560 ntBASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Dbh-201ENSMUST00000000910 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Gm43858-201ENSMUST00000199418 1778 ntBASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Sephs1-201ENSMUST00000027973 5319 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Cad-203ENSMUST00000200953 6489 ntTSL 5 BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Sh2d7-202ENSMUST00000118413 1316 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 1190007I07Rik-205ENSMUST00000185168 469 ntAPPRIS P1 TSL 2 BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Gm31728-201ENSMUST00000192164 435 ntTSL 3 BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Gm9299-201ENSMUST00000206392 1140 ntBASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Lsm7-208ENSMUST00000220225 1129 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Rsph9-201ENSMUST00000024762 966 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Lce3a-201ENSMUST00000067318 549 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Rpl10-202ENSMUST00000074085 855 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Gatsl2-201ENSMUST00000016088 7367 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Ubxn10-202ENSMUST00000105810 3304 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Dnaja2-201ENSMUST00000034138 2919 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
Ddx28Q9CWT6 Abcc10-202ENSMUST00000095261 5266 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms