Protein–RNA interactions for Protein: Q8CEI3

Ccdc28a, Coiled-coil domain-containing 28A, mousemouse

Predictions only

Length 192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28aQ8CEI3 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Gm15806-201ENSMUST00000120696 955 ntBASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 2010320O07Rik-201ENSMUST00000160935 525 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Txnl4b-202ENSMUST00000178445 830 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Gm18584-201ENSMUST00000203098 964 ntBASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Gm5781-201ENSMUST00000219792 443 ntBASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Ier3-201ENSMUST00000003635 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Wdr74-201ENSMUST00000049424 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Utp23-201ENSMUST00000059599 740 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 A230072I06Rik-201ENSMUST00000098935 1839 ntAPPRIS P1 BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Ntpcr-202ENSMUST00000065135 1497 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Ercc2-201ENSMUST00000062831 3578 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Gm5106-201ENSMUST00000181058 1334 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Gdpd2-201ENSMUST00000019503 2495 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Gm45776-201ENSMUST00000212366 1522 ntBASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Ptprh-202ENSMUST00000166650 3642 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Gtf2e1-201ENSMUST00000023525 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Ctsd-201ENSMUST00000066401 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
Ccdc28aQ8CEI3 Tmem159-202ENSMUST00000118737 1395 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Neu2-201ENSMUST00000070898 1570 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Tbcd-201ENSMUST00000103013 3906 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Hs3st1-202ENSMUST00000117944 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Sema3f-201ENSMUST00000080560 3395 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Gm29649-201ENSMUST00000185649 419 ntBASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Phgr1-201ENSMUST00000061360 538 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Ebf2-202ENSMUST00000176029 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Prkag2-202ENSMUST00000076306 2838 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Mki67-201ENSMUST00000033310 10061 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Ttc14-201ENSMUST00000099153 9661 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Cluap1-201ENSMUST00000040881 1779 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Fbxo44-208ENSMUST00000167160 1572 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Gm42498-201ENSMUST00000199981 1372 ntBASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Als2cl-203ENSMUST00000130386 5056 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Ccdc28aQ8CEI3 Six4-202ENSMUST00000175693 6817 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Gripap1-202ENSMUST00000101694 2867 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Gm8522-201ENSMUST00000118416 1929 ntBASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Klhl14-202ENSMUST00000122333 4423 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Gdpd5-208ENSMUST00000213887 2711 ntTSL 5 BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Gm37513-201ENSMUST00000194830 2268 ntBASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Gm38378-201ENSMUST00000195153 2268 ntBASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Gm9431-201ENSMUST00000119765 1051 ntBASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Tyms-ps-201ENSMUST00000219550 915 ntBASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Dhrs4-202ENSMUST00000226168 828 ntBASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Olfr524-201ENSMUST00000051943 1058 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Gm6091-201ENSMUST00000098307 165 ntBASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Ncapd2-201ENSMUST00000043848 4629 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Bicra-204ENSMUST00000210781 5975 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Wnt5a-201ENSMUST00000063465 7010 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 N4bp2l1-201ENSMUST00000016279 1905 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Gm43061-201ENSMUST00000198850 2241 ntBASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Wdr4-207ENSMUST00000171171 4153 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Ccdc28aQ8CEI3 Gm42372-201ENSMUST00000206129 5067 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Retrieved 100 of 76,532 protein–RNA pairs in 36.1 ms