Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Nudt8-201ENSMUST00000155405 3904 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Ddah1-201ENSMUST00000029845 3764 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Myo7a-204ENSMUST00000107128 7506 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Gm14109-201ENSMUST00000118814 309 ntBASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Gm13492-201ENSMUST00000119772 665 ntBASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Gm26361-201ENSMUST00000158868 186 ntBASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Igdcc4-203ENSMUST00000166273 778 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC14.19□□□□□ -0.14
Vps53Q8CCB4 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Gm34767-201ENSMUST00000191813 1062 ntBASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC14.19□□□□□ -0.14
Vps53Q8CCB4 AC161537.1-201ENSMUST00000226199 1015 ntBASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Tmem247-201ENSMUST00000042172 752 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Arnt2-213ENSMUST00000209133 6228 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Gm13657-201ENSMUST00000135682 1939 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Lmo7-205ENSMUST00000159314 5774 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Scyl2-201ENSMUST00000092227 3566 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Sorbs1-203ENSMUST00000165212 2175 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Otop1-201ENSMUST00000063136 3106 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Gm37737-201ENSMUST00000195013 1638 ntBASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Kcnd1-201ENSMUST00000009875 5287 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Aldh6a1-201ENSMUST00000085192 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Vps53Q8CCB4 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Vps53Q8CCB4 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vps53Q8CCB4 Abcd1-202ENSMUST00000114461 2323 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Vps53Q8CCB4 Eml5-201ENSMUST00000065716 9482 ntTSL 5 BASIC14.18□□□□□ -0.14
Vps53Q8CCB4 Pom121l12-201ENSMUST00000117584 1039 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Vps53Q8CCB4 Gm20470-201ENSMUST00000174654 331 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Vps53Q8CCB4 Adtrp-204ENSMUST00000179758 1046 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Vps53Q8CCB4 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC14.18□□□□□ -0.14
Vps53Q8CCB4 AC167013.1-201ENSMUST00000228592 202 ntBASIC14.18□□□□□ -0.14
Vps53Q8CCB4 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vps53Q8CCB4 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vps53Q8CCB4 Gm10131-201ENSMUST00000080152 736 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Vps53Q8CCB4 Akr1d1-201ENSMUST00000040987 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vps53Q8CCB4 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vps53Q8CCB4 Cad-203ENSMUST00000200953 6489 ntTSL 5 BASIC14.18□□□□□ -0.14
Vps53Q8CCB4 Chrna10-201ENSMUST00000084830 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vps53Q8CCB4 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Vps53Q8CCB4 Tardbp-210ENSMUST00000172073 6513 ntTSL 5 BASIC14.18□□□□□ -0.14
Vps53Q8CCB4 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vps53Q8CCB4 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vps53Q8CCB4 Maml3-202ENSMUST00000121440 8288 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Vps53Q8CCB4 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Vps53Q8CCB4 Cd27-201ENSMUST00000032486 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Zfp108-201ENSMUST00000072713 1929 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Gm5053-201ENSMUST00000208361 1678 ntBASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 4930550C17Rik-201ENSMUST00000181629 1411 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Gm34785-201ENSMUST00000222571 4582 ntTSL 5 BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Gm19434-201ENSMUST00000204330 2573 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Gm12201-201ENSMUST00000120657 1234 ntBASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Gm12678-201ENSMUST00000154177 692 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Gm8885-201ENSMUST00000189382 598 ntBASIC14.17□□□□□ -0.14
Vps53Q8CCB4 1700023F06Rik-201ENSMUST00000021323 1199 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Nppc-201ENSMUST00000027449 1042 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Gm22058-201ENSMUST00000083393 310 ntBASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Ocrl-203ENSMUST00000115020 3210 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Tacr2-201ENSMUST00000020278 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Fibin-201ENSMUST00000099626 2267 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Gm27177-202ENSMUST00000183514 2703 ntBASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Cacna1s-202ENSMUST00000112068 6018 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Vps53Q8CCB4 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vps53Q8CCB4 Ackr2-201ENSMUST00000050327 2853 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vps53Q8CCB4 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vps53Q8CCB4 Gm7789-202ENSMUST00000211273 1400 ntBASIC14.16□□□□□ -0.14
Vps53Q8CCB4 Trim25-203ENSMUST00000107896 5590 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vps53Q8CCB4 Cog7-203ENSMUST00000205438 3355 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Vps53Q8CCB4 Adck1-202ENSMUST00000166940 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vps53Q8CCB4 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vps53Q8CCB4 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vps53Q8CCB4 Ebp-201ENSMUST00000033509 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vps53Q8CCB4 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC14.16□□□□□ -0.14
Vps53Q8CCB4 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Vps53Q8CCB4 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 42.4 ms