Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm2310-201ENSMUST00000179217 1131 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Gm28638-201ENSMUST00000188152 288 ntTSL 5 BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Gm35960-201ENSMUST00000202712 767 ntBASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Fxyd1-217ENSMUST00000206860 594 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Tmem108-206ENSMUST00000215136 724 ntTSL 3 BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 AC132317.1-201ENSMUST00000227227 962 ntBASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Ddit3-201ENSMUST00000026475 890 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Saa3-201ENSMUST00000006956 555 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Olfr91-201ENSMUST00000087144 939 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Gm12166-201ENSMUST00000093169 958 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Grpel2-201ENSMUST00000062991 4030 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Slc25a22-223ENSMUST00000201710 2565 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Epb42-201ENSMUST00000023987 2695 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Ubl5-201ENSMUST00000129414 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Eif1ax-201ENSMUST00000087143 5172 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Mettl17-201ENSMUST00000047899 1623 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Cad-201ENSMUST00000013773 7137 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sh3rf1Q69ZI1 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 G630016G05Rik-202ENSMUST00000156095 3398 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 AC164426.2-201ENSMUST00000225993 2492 ntBASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Rsbn1l-202ENSMUST00000196780 7651 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 CT573086.2-201ENSMUST00000227277 4992 ntBASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Rnf170-201ENSMUST00000014022 3929 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Qdpr-203ENSMUST00000118097 1232 ntTSL 5 BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Gm12749-201ENSMUST00000122138 1159 ntBASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Gm16302-201ENSMUST00000159268 428 ntTSL 3 BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Prr13-204ENSMUST00000164957 1055 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Gm17208-201ENSMUST00000168388 535 ntBASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Gm20482-202ENSMUST00000174729 825 ntBASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Mir3102-201ENSMUST00000175555 104 ntBASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Gm28196-201ENSMUST00000187719 640 ntBASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Olfr1414-202ENSMUST00000189174 1159 ntAPPRIS P1 TSL 3 BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Gm5441-202ENSMUST00000190132 449 ntTSL 2 BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Gm37466-201ENSMUST00000195692 652 ntBASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Gm18584-201ENSMUST00000203098 964 ntBASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Gm5781-201ENSMUST00000219792 443 ntBASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 CT573034.1-201ENSMUST00000222983 313 ntBASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Usp3-205ENSMUST00000127569 5607 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Zcchc11-202ENSMUST00000097925 5865 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Gm10419-202ENSMUST00000196693 2530 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Gm4735-201ENSMUST00000138679 1302 ntBASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Gm5855-201ENSMUST00000200240 1305 ntBASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Tshr-201ENSMUST00000021343 1339 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sh3rf1Q69ZI1 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Olfr1428-203ENSMUST00000214103 2127 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Pir-201ENSMUST00000033749 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Zfp148-202ENSMUST00000165418 9431 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Fosb-201ENSMUST00000003640 3782 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Mrpl45-201ENSMUST00000019026 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Cacnb4-206ENSMUST00000178799 7981 ntTSL 5 BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Gm22323-201ENSMUST00000103832 109 ntBASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Upk3bl-202ENSMUST00000111137 1119 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Mrps17-205ENSMUST00000119985 859 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Gm14704-201ENSMUST00000120300 874 ntBASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 4931428L18Rik-202ENSMUST00000135245 889 ntAPPRIS P5 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Gm14230-202ENSMUST00000137463 874 ntTSL 2 BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Gm11791-201ENSMUST00000139327 336 ntTSL 3 BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 P2rx4-204ENSMUST00000139631 1030 ntTSL 5 BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 P2rx4-206ENSMUST00000142664 1111 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Tnni2-206ENSMUST00000149529 768 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
Sh3rf1Q69ZI1 Gm8738-201ENSMUST00000172606 329 ntBASIC12.35□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms