Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Ptbp2-201ENSMUST00000029780 3364 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Zdhhc21-202ENSMUST00000107239 1148 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Smim8-204ENSMUST00000108133 935 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Gm12389-201ENSMUST00000117696 418 ntBASIC13.34□□□□□ -0.27
Col11a1Q61245 Gm23675-201ENSMUST00000157311 125 ntBASIC13.34□□□□□ -0.27
Col11a1Q61245 Gm27956-201ENSMUST00000175604 260 ntBASIC13.34□□□□□ -0.27
Col11a1Q61245 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC13.34□□□□□ -0.27
Col11a1Q61245 1700109G14Rik-202ENSMUST00000188538 754 ntTSL 3 BASIC13.34□□□□□ -0.27
Col11a1Q61245 Gm43969-201ENSMUST00000204833 535 ntBASIC13.34□□□□□ -0.27
Col11a1Q61245 Hddc2-201ENSMUST00000000304 858 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Gm9530-201ENSMUST00000181160 3281 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Arhgef37-201ENSMUST00000171629 3234 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
Col11a1Q61245 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Hapln4-201ENSMUST00000007738 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Spag6-201ENSMUST00000095132 2458 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Col11a1Q61245 Gtf2ird1-212ENSMUST00000200944 3133 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Uqcrc2-201ENSMUST00000033176 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Gm14820-201ENSMUST00000126286 1449 ntTSL 3 BASIC13.34□□□□□ -0.27
Col11a1Q61245 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
Col11a1Q61245 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Fbrs-202ENSMUST00000205432 4166 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
Col11a1Q61245 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Gm45779-201ENSMUST00000212189 4064 ntBASIC13.34□□□□□ -0.27
Col11a1Q61245 Ankrd61-201ENSMUST00000079624 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Trav11-201ENSMUST00000103585 343 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Col11a1Q61245 Trav11d-201ENSMUST00000103648 342 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
Col11a1Q61245 Gm11957-201ENSMUST00000118304 779 ntBASIC13.34□□□□□ -0.27
Col11a1Q61245 Gm14266-202ENSMUST00000146542 1067 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Gm13802-201ENSMUST00000150159 663 ntTSL 3 BASIC13.34□□□□□ -0.27
Col11a1Q61245 Gm13572-201ENSMUST00000153675 559 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Gm25492-201ENSMUST00000157383 129 ntBASIC13.34□□□□□ -0.27
Col11a1Q61245 Adora3-202ENSMUST00000164730 1219 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Use1-201ENSMUST00000019169 854 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Trav11n-201ENSMUST00000200113 343 ntBASIC13.34□□□□□ -0.27
Col11a1Q61245 Gm45682-201ENSMUST00000209434 1256 ntTSL 5 BASIC13.34□□□□□ -0.27
Col11a1Q61245 Tsga10ip-201ENSMUST00000044527 487 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC13.34□□□□□ -0.27
Col11a1Q61245 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Rhot1-204ENSMUST00000092857 3687 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Zc3hc1-202ENSMUST00000102992 1865 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
Col11a1Q61245 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Col11a1Q61245 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
Col11a1Q61245 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.27
Col11a1Q61245 Mta1-202ENSMUST00000069690 2697 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Col11a1Q61245 Dpt-201ENSMUST00000027861 1724 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col11a1Q61245 Naa40-201ENSMUST00000025675 3275 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col11a1Q61245 Opa1-201ENSMUST00000038867 3230 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col11a1Q61245 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col11a1Q61245 Fscn3-201ENSMUST00000031719 1902 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col11a1Q61245 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col11a1Q61245 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col11a1Q61245 Gm8050-201ENSMUST00000171987 1595 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Col11a1Q61245 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
Col11a1Q61245 Eef1d-207ENSMUST00000116440 896 ntAPPRIS ALT2 TSL 3 BASIC13.33□□□□□ -0.28
Col11a1Q61245 Gm9166-201ENSMUST00000120293 561 ntBASIC13.33□□□□□ -0.28
Col11a1Q61245 Mir8093-201ENSMUST00000185043 137 ntBASIC13.33□□□□□ -0.28
Col11a1Q61245 Gm5907-202ENSMUST00000210969 661 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col11a1Q61245 Proz-203ENSMUST00000211363 984 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col11a1Q61245 Sema4a-202ENSMUST00000107531 2897 ntTSL 5 BASIC13.33□□□□□ -0.28
Col11a1Q61245 Cdk11b-201ENSMUST00000067081 2595 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col11a1Q61245 Gm3755-201ENSMUST00000169555 1462 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
Col11a1Q61245 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC13.33□□□□□ -0.28
Col11a1Q61245 Cacng3-201ENSMUST00000084615 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col11a1Q61245 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col11a1Q61245 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col11a1Q61245 H2-M3-201ENSMUST00000038580 1438 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col11a1Q61245 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col11a1Q61245 Oma1-201ENSMUST00000035780 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col11a1Q61245 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col11a1Q61245 Sult1a1-201ENSMUST00000106371 1370 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col11a1Q61245 Sult1a1-202ENSMUST00000106372 1369 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Col11a1Q61245 Gm6170-201ENSMUST00000187672 1388 ntBASIC13.33□□□□□ -0.28
Col11a1Q61245 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Col11a1Q61245 AC123834.1-201ENSMUST00000225346 2043 ntBASIC13.32□□□□□ -0.28
Col11a1Q61245 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC13.32□□□□□ -0.28
Col11a1Q61245 Nfic-202ENSMUST00000078185 3163 ntTSL 5 BASIC13.32□□□□□ -0.28
Col11a1Q61245 Gm38089-201ENSMUST00000193585 1514 ntBASIC13.32□□□□□ -0.28
Col11a1Q61245 Ptpn7-203ENSMUST00000187985 1990 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Col11a1Q61245 Gm23612-201ENSMUST00000103823 110 ntBASIC13.32□□□□□ -0.28
Col11a1Q61245 Gm13204-201ENSMUST00000120110 821 ntBASIC13.32□□□□□ -0.28
Col11a1Q61245 Dydc1-202ENSMUST00000161837 829 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
Col11a1Q61245 Gm9630-201ENSMUST00000178304 885 ntBASIC13.32□□□□□ -0.28
Col11a1Q61245 Gm23576-201ENSMUST00000179918 110 ntBASIC13.32□□□□□ -0.28
Col11a1Q61245 Gm9081-201ENSMUST00000182346 991 ntBASIC13.32□□□□□ -0.28
Col11a1Q61245 Plac9a-203ENSMUST00000183725 439 ntTSL 3 BASIC13.32□□□□□ -0.28
Col11a1Q61245 Plac9b-202ENSMUST00000183811 396 ntTSL 3 BASIC13.32□□□□□ -0.28
Col11a1Q61245 Gm26670-202ENSMUST00000226862 340 ntBASIC13.32□□□□□ -0.28
Col11a1Q61245 Krtap4-1-201ENSMUST00000081007 1015 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Col11a1Q61245 Ccl21a-201ENSMUST00000095114 870 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col11a1Q61245 G3bp2-203ENSMUST00000167918 4232 ntAPPRIS ALT1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Col11a1Q61245 Triml2-201ENSMUST00000163869 1467 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 42 ms