Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Limch1Q3UH68 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Limch1Q3UH68 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Limch1Q3UH68 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Limch1Q3UH68 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Limch1Q3UH68 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Limch1Q3UH68 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Limch1Q3UH68 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
Limch1Q3UH68 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Limch1Q3UH68 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Limch1Q3UH68 Hdac5-201ENSMUST00000008999 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
Limch1Q3UH68 Jarid2-201ENSMUST00000044608 5019 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Limch1Q3UH68 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Limch1Q3UH68 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Limch1Q3UH68 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC14.33□□□□□ -0.11
Limch1Q3UH68 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Limch1Q3UH68 Fbxo46-201ENSMUST00000053109 4873 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Limch1Q3UH68 Slc6a4-201ENSMUST00000021195 2725 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Limch1Q3UH68 Tpm1-207ENSMUST00000113687 962 ntTSL 5 BASIC14.33□□□□□ -0.12
Limch1Q3UH68 Gm14028-201ENSMUST00000117434 479 ntBASIC14.33□□□□□ -0.12
Limch1Q3UH68 Gm13875-201ENSMUST00000120162 282 ntBASIC14.33□□□□□ -0.12
Limch1Q3UH68 Gm15547-201ENSMUST00000122152 333 ntBASIC14.33□□□□□ -0.12
Limch1Q3UH68 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Limch1Q3UH68 Ccdc188-201ENSMUST00000167061 747 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Limch1Q3UH68 Gstp-ps-201ENSMUST00000195526 631 ntBASIC14.33□□□□□ -0.12
Limch1Q3UH68 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Limch1Q3UH68 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Limch1Q3UH68 Fgfr1op-201ENSMUST00000024636 3077 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Limch1Q3UH68 Wdr81-204ENSMUST00000173320 6908 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Limch1Q3UH68 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC14.33□□□□□ -0.12
Limch1Q3UH68 Pbxip1-201ENSMUST00000038942 4479 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Limch1Q3UH68 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Limch1Q3UH68 Spata33-208ENSMUST00000212892 2940 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Limch1Q3UH68 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Limch1Q3UH68 Wdr89-201ENSMUST00000062370 2979 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Limch1Q3UH68 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Limch1Q3UH68 Cfap69-201ENSMUST00000054865 4956 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Limch1Q3UH68 AC122840.1-201ENSMUST00000220915 3334 ntBASIC14.33□□□□□ -0.12
Limch1Q3UH68 Gprasp1-201ENSMUST00000113144 5843 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Limch1Q3UH68 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Limch1Q3UH68 Pdhx-201ENSMUST00000011058 2506 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Limch1Q3UH68 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Limch1Q3UH68 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Myocd-201ENSMUST00000101042 2585 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Baiap3-202ENSMUST00000182056 4645 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Armcx1-205ENSMUST00000113199 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC14.32□□□□□ -0.12
Limch1Q3UH68 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Gm13665-201ENSMUST00000120830 528 ntBASIC14.32□□□□□ -0.12
Limch1Q3UH68 Gm14999-201ENSMUST00000121039 624 ntBASIC14.32□□□□□ -0.12
Limch1Q3UH68 Gm8908-201ENSMUST00000121633 1024 ntBASIC14.32□□□□□ -0.12
Limch1Q3UH68 Mir5120-201ENSMUST00000175020 78 ntBASIC14.32□□□□□ -0.12
Limch1Q3UH68 Nat8f7-202ENSMUST00000179613 686 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Gm27023-201ENSMUST00000182372 285 ntBASIC14.32□□□□□ -0.12
Limch1Q3UH68 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Gm37201-201ENSMUST00000191845 523 ntBASIC14.32□□□□□ -0.12
Limch1Q3UH68 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 4930479H17Rik-201ENSMUST00000208824 292 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 AC166574.4-201ENSMUST00000227165 1937 ntBASIC14.32□□□□□ -0.12
Limch1Q3UH68 Pfkfb3-220ENSMUST00000192949 4801 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Prr18-202ENSMUST00000163887 3251 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Fancc-217ENSMUST00000163091 2995 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Pomgnt1-205ENSMUST00000121052 2693 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Tctn3-203ENSMUST00000135795 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Gm11476-201ENSMUST00000127006 2019 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Xpo1-201ENSMUST00000020538 5145 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Plekhg5-204ENSMUST00000118648 3818 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Limch1Q3UH68 AC154517.2-201ENSMUST00000220829 2458 ntBASIC14.32□□□□□ -0.12
Limch1Q3UH68 Mfsd13b-205ENSMUST00000216241 1761 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Limch1Q3UH68 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Limch1Q3UH68 Csrnp3-207ENSMUST00000145598 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Limch1Q3UH68 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC14.31□□□□□ -0.12
Limch1Q3UH68 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Limch1Q3UH68 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC14.31□□□□□ -0.12
Limch1Q3UH68 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Limch1Q3UH68 Lins1-202ENSMUST00000077967 2647 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
Limch1Q3UH68 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Limch1Q3UH68 Kcna10-201ENSMUST00000055064 1913 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Limch1Q3UH68 Prss43-201ENSMUST00000077549 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Limch1Q3UH68 Atp9a-201ENSMUST00000029060 3529 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Limch1Q3UH68 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Limch1Q3UH68 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Limch1Q3UH68 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Limch1Q3UH68 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
Limch1Q3UH68 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms