Protein–RNA interactions for Protein: P97952

Scn1b, Sodium channel subunit beta-1, mousemouse

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn1bP97952 Aoc2-201ENSMUST00000041095 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Scn1bP97952 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Scn1bP97952 Hyal3-202ENSMUST00000148440 1380 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Scn1bP97952 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Scn1bP97952 Kifc5b-201ENSMUST00000078961 2627 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Scn1bP97952 Epb41-207ENSMUST00000105975 5235 ntAPPRIS ALT2 TSL 5 BASIC11.12□□□□□ -0.63
Scn1bP97952 4930488L21Rik-201ENSMUST00000181864 3244 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Scn1bP97952 Ccl22-201ENSMUST00000034231 2216 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Scn1bP97952 Enox1-203ENSMUST00000227662 3064 ntAPPRIS ALT2 BASIC11.12□□□□□ -0.63
Scn1bP97952 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC11.12□□□□□ -0.63
Scn1bP97952 Zscan12-203ENSMUST00000225545 4405 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Scn1bP97952 Gm19692-201ENSMUST00000203856 2084 ntBASIC11.12□□□□□ -0.63
Scn1bP97952 Cklf-202ENSMUST00000098464 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.63
Scn1bP97952 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Scn1bP97952 Scn10a-202ENSMUST00000213392 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Akap12-201ENSMUST00000045730 6195 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Scmh1-201ENSMUST00000000087 3353 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Gm43522-201ENSMUST00000196697 1922 ntBASIC11.11□□□□□ -0.63
Scn1bP97952 Phactr2-201ENSMUST00000079698 1934 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Scn1bP97952 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Scn1bP97952 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Nipbl-201ENSMUST00000052965 8815 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Gm43666-201ENSMUST00000197116 2989 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Gm38273-201ENSMUST00000194987 2382 ntBASIC11.11□□□□□ -0.63
Scn1bP97952 Retreg1-206ENSMUST00000228306 1430 ntBASIC11.11□□□□□ -0.63
Scn1bP97952 Qsox1-201ENSMUST00000035325 3348 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC11.11□□□□□ -0.63
Scn1bP97952 Ddx11-201ENSMUST00000163605 4149 ntAPPRIS P2 TSL 5 BASIC11.11□□□□□ -0.63
Scn1bP97952 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Cyp4b1-201ENSMUST00000102707 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Gm38292-201ENSMUST00000192646 3045 ntBASIC11.11□□□□□ -0.63
Scn1bP97952 Gpat3-202ENSMUST00000092990 3035 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Lamtor3-201ENSMUST00000168345 1295 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Gm26600-201ENSMUST00000181637 1256 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC11.11□□□□□ -0.63
Scn1bP97952 Gm38411-201ENSMUST00000197971 941 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Gm29682-201ENSMUST00000210896 1251 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Ndufs6-201ENSMUST00000022097 568 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 AC156560.2-201ENSMUST00000221232 264 ntBASIC11.11□□□□□ -0.63
Scn1bP97952 AC154687.2-201ENSMUST00000223853 640 ntBASIC11.11□□□□□ -0.63
Scn1bP97952 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Cby3-201ENSMUST00000052596 703 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Mir339-201ENSMUST00000083659 96 ntBASIC11.11□□□□□ -0.63
Scn1bP97952 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Tpra1-218ENSMUST00000203185 1718 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Scn1bP97952 Traf7-202ENSMUST00000088464 2504 ntAPPRIS P1 TSL 5 BASIC11.11□□□□□ -0.63
Scn1bP97952 Tmem269-201ENSMUST00000030394 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Celrr-202ENSMUST00000181433 1561 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Ikzf2-202ENSMUST00000187184 2013 ntTSL 5 BASIC11.11□□□□□ -0.63
Scn1bP97952 Plekha6-204ENSMUST00000187285 5040 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Scn1bP97952 Gm17746-201ENSMUST00000223429 3772 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC11.11□□□□□ -0.63
Scn1bP97952 Thsd4-206ENSMUST00000171654 8522 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Scn1bP97952 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Scn1bP97952 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC11.1□□□□□ -0.63
Scn1bP97952 Enah-201ENSMUST00000078719 2889 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 Gm11725-201ENSMUST00000125607 1850 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 Eps8l2-201ENSMUST00000026577 3191 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 Myh8-201ENSMUST00000019625 6149 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 Zfyve26-203ENSMUST00000218377 2726 ntTSL 5 BASIC11.1□□□□□ -0.63
Scn1bP97952 D030045P18Rik-204ENSMUST00000215085 2186 ntTSL 5 BASIC11.1□□□□□ -0.63
Scn1bP97952 Tns1-209ENSMUST00000187691 2813 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 Nap1l3-201ENSMUST00000079490 2837 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Scn1bP97952 Trip4-202ENSMUST00000119245 4211 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 Acsl6-201ENSMUST00000000145 2297 ntTSL 5 BASIC11.1□□□□□ -0.63
Scn1bP97952 Hs6st2-201ENSMUST00000088172 4318 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 Topors-201ENSMUST00000042575 3856 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 Dcaf17-209ENSMUST00000154704 7739 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 Papln-202ENSMUST00000121733 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 Nup210-201ENSMUST00000032179 7037 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 Gm15371-201ENSMUST00000117057 784 ntBASIC11.1□□□□□ -0.63
Scn1bP97952 Ldha-ps-201ENSMUST00000119390 995 ntBASIC11.1□□□□□ -0.63
Scn1bP97952 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC11.1□□□□□ -0.63
Scn1bP97952 Gm16342-201ENSMUST00000124025 1025 ntBASIC11.1□□□□□ -0.63
Scn1bP97952 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 Inpp4a-211ENSMUST00000168546 2964 ntTSL 5 BASIC11.1□□□□□ -0.63
Scn1bP97952 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC11.1□□□□□ -0.63
Scn1bP97952 Flg-208ENSMUST00000180308 1076 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 Mir6977-201ENSMUST00000184960 64 ntBASIC11.1□□□□□ -0.63
Scn1bP97952 1700030C10Rik-202ENSMUST00000186243 126 ntBASIC11.1□□□□□ -0.63
Scn1bP97952 Gm36979-201ENSMUST00000193616 539 ntTSL 5 BASIC11.1□□□□□ -0.63
Scn1bP97952 1700011B04Rik-206ENSMUST00000221013 824 ntTSL 5 BASIC11.1□□□□□ -0.63
Scn1bP97952 Gm5626-201ENSMUST00000222151 1058 ntBASIC11.1□□□□□ -0.63
Scn1bP97952 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 Zfp629-202ENSMUST00000084564 5829 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 Zfp369-203ENSMUST00000130799 1580 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC11.1□□□□□ -0.63
Scn1bP97952 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Scn1bP97952 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC11.1□□□□□ -0.63
Scn1bP97952 Myo15-203ENSMUST00000094135 11715 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms