Protein–RNA interactions for Protein: P70354

Msx3, Homeobox protein MSX-3, mousemouse

Predictions only

Length 204 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx3P70354 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx3P70354 Gm4780-202ENSMUST00000215200 2644 ntBASIC12.51□□□□□ -0.41
Msx3P70354 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx3P70354 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Msx3P70354 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Msx3P70354 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC12.51□□□□□ -0.41
Msx3P70354 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Msx3P70354 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Msx3P70354 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Bin2-205ENSMUST00000182814 1901 ntTSL 5 BASIC12.5□□□□□ -0.41
Msx3P70354 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC12.5□□□□□ -0.41
Msx3P70354 1110032A03Rik-201ENSMUST00000042468 2082 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Bmp3-201ENSMUST00000031278 6548 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Trim23-201ENSMUST00000022225 3416 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Pla2g10-202ENSMUST00000115807 964 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Gm14247-201ENSMUST00000120950 237 ntBASIC12.5□□□□□ -0.41
Msx3P70354 C230066G23Rik-201ENSMUST00000150195 650 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
Msx3P70354 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Gm8176-201ENSMUST00000191297 1099 ntBASIC12.5□□□□□ -0.41
Msx3P70354 1700031P21Rik-203ENSMUST00000191400 466 ntTSL 3 BASIC12.5□□□□□ -0.41
Msx3P70354 Gm18054-201ENSMUST00000207539 555 ntBASIC12.5□□□□□ -0.41
Msx3P70354 Gm31793-201ENSMUST00000218557 415 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC12.5□□□□□ -0.41
Msx3P70354 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC12.5□□□□□ -0.41
Msx3P70354 Gm46400-201ENSMUST00000222294 724 ntTSL 5 BASIC12.5□□□□□ -0.41
Msx3P70354 Trex2-201ENSMUST00000033738 1017 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Dmkn-201ENSMUST00000041703 662 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Ifi27-202ENSMUST00000076702 828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Gm25857-201ENSMUST00000082788 129 ntBASIC12.5□□□□□ -0.41
Msx3P70354 Nhlrc2-201ENSMUST00000071423 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Tmx3-201ENSMUST00000025515 4611 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
Msx3P70354 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC12.5□□□□□ -0.41
Msx3P70354 Cyp4f40-201ENSMUST00000165061 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Gm8522-201ENSMUST00000118416 1929 ntBASIC12.5□□□□□ -0.41
Msx3P70354 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Cep41-203ENSMUST00000115131 2256 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Msx3P70354 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Cyth1-203ENSMUST00000106302 3119 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC12.5□□□□□ -0.41
Msx3P70354 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Fgd5-202ENSMUST00000113466 5621 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Msx3P70354 Lmbr1-203ENSMUST00000196321 3422 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Bcl11a-201ENSMUST00000000881 3061 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC12.49□□□□□ -0.41
Msx3P70354 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Gm1995-201ENSMUST00000220838 2602 ntBASIC12.49□□□□□ -0.41
Msx3P70354 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
Msx3P70354 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
Msx3P70354 Tirap-203ENSMUST00000176531 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC12.49□□□□□ -0.41
Msx3P70354 Gm43267-201ENSMUST00000199664 1796 ntBASIC12.49□□□□□ -0.41
Msx3P70354 Gm45428-201ENSMUST00000209619 1789 ntBASIC12.49□□□□□ -0.41
Msx3P70354 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 AC131068.2-201ENSMUST00000226175 1453 ntBASIC12.49□□□□□ -0.41
Msx3P70354 Gm18626-201ENSMUST00000221512 1409 ntBASIC12.49□□□□□ -0.41
Msx3P70354 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Gm25214-201ENSMUST00000104573 129 ntBASIC12.49□□□□□ -0.41
Msx3P70354 Gm12957-201ENSMUST00000117835 377 ntBASIC12.49□□□□□ -0.41
Msx3P70354 Atpif1-203ENSMUST00000152993 462 ntTSL 2 BASIC12.49□□□□□ -0.41
Msx3P70354 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Krtap16-3-201ENSMUST00000179707 601 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
Msx3P70354 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC12.49□□□□□ -0.41
Msx3P70354 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC12.49□□□□□ -0.41
Msx3P70354 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Olfr284-202ENSMUST00000206647 966 ntBASIC12.49□□□□□ -0.41
Msx3P70354 Gm19994-201ENSMUST00000217086 586 ntBASIC12.49□□□□□ -0.41
Msx3P70354 Trappc4-206ENSMUST00000217163 1185 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 AC153962.4-201ENSMUST00000217878 242 ntBASIC12.49□□□□□ -0.41
Msx3P70354 AC158523.3-201ENSMUST00000220664 864 ntTSL 5 BASIC12.49□□□□□ -0.41
Msx3P70354 Rrp36-201ENSMUST00000024766 1195 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Jup-201ENSMUST00000001592 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Abcb9-201ENSMUST00000031354 3661 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Msx3P70354 Atl3-202ENSMUST00000170373 6474 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Msx3P70354 Gm19692-201ENSMUST00000203856 2084 ntBASIC12.49□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 46.7 ms