Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm3028-201ENSMUST00000213805 1119 ntBASIC11.55□□□□□ -0.56
Cdx2P43241 AC113082.1-201ENSMUST00000217324 327 ntBASIC11.55□□□□□ -0.56
Cdx2P43241 Gm5537-201ENSMUST00000091117 1252 ntBASIC11.55□□□□□ -0.56
Cdx2P43241 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx2P43241 Gm20125-205ENSMUST00000208005 1979 ntTSL 5 BASIC11.55□□□□□ -0.56
Cdx2P43241 Zfp207-206ENSMUST00000165565 2311 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx2P43241 Myo18a-202ENSMUST00000092884 5117 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
Cdx2P43241 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC11.55□□□□□ -0.56
Cdx2P43241 Gm13384-201ENSMUST00000117166 1344 ntBASIC11.55□□□□□ -0.56
Cdx2P43241 Gm4735-201ENSMUST00000138679 1302 ntBASIC11.55□□□□□ -0.56
Cdx2P43241 Gm5855-201ENSMUST00000200240 1305 ntBASIC11.55□□□□□ -0.56
Cdx2P43241 Clmp-201ENSMUST00000034522 4154 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx2P43241 Sppl2a-201ENSMUST00000028844 5616 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx2P43241 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx2P43241 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx2P43241 Spib-201ENSMUST00000035323 2788 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx2P43241 Clcn4-203ENSMUST00000210061 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx2P43241 Sarm1-201ENSMUST00000061174 4083 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx2P43241 Gm33543-203ENSMUST00000211096 1722 ntAPPRIS P5 TSL 5 BASIC11.55□□□□□ -0.56
Cdx2P43241 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx2P43241 Kcnh7-202ENSMUST00000112452 2849 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
Cdx2P43241 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Pag1-204ENSMUST00000161949 8256 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Pax2-203ENSMUST00000174490 4358 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Colgalt2-201ENSMUST00000044311 4093 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Ccdc126-202ENSMUST00000114491 2372 ntTSL 5 BASIC11.54□□□□□ -0.56
Cdx2P43241 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Tk1-201ENSMUST00000026661 1440 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Tssk4-201ENSMUST00000007735 1420 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Pltp-202ENSMUST00000109316 2226 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Krba1-203ENSMUST00000114571 6695 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Gm26551-201ENSMUST00000181262 2432 ntTSL 5 BASIC11.54□□□□□ -0.56
Cdx2P43241 Setdb2-201ENSMUST00000095775 3034 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Cdx2P43241 Hsph1-201ENSMUST00000074846 3240 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC11.54□□□□□ -0.56
Cdx2P43241 Gm15207-201ENSMUST00000119259 442 ntBASIC11.54□□□□□ -0.56
Cdx2P43241 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Gm13966-201ENSMUST00000148420 832 ntTSL 3 BASIC11.54□□□□□ -0.56
Cdx2P43241 Gm13830-203ENSMUST00000148916 247 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Gm6407-201ENSMUST00000176468 549 ntBASIC11.54□□□□□ -0.56
Cdx2P43241 Gm26838-201ENSMUST00000180485 911 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Gm10731-201ENSMUST00000181171 448 ntBASIC11.54□□□□□ -0.56
Cdx2P43241 Gm4654-201ENSMUST00000183305 982 ntBASIC11.54□□□□□ -0.56
Cdx2P43241 Gm45338-201ENSMUST00000209198 820 ntTSL 5 BASIC11.54□□□□□ -0.56
Cdx2P43241 AC027700.1-201ENSMUST00000213965 370 ntTSL 5 BASIC11.54□□□□□ -0.56
Cdx2P43241 AC174797.2-202ENSMUST00000225729 568 ntBASIC11.54□□□□□ -0.56
Cdx2P43241 Npff-201ENSMUST00000023814 540 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Col20a1-205ENSMUST00000228434 5012 ntAPPRIS P2 BASIC11.54□□□□□ -0.56
Cdx2P43241 Sfpq-201ENSMUST00000030623 3465 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Uprt-201ENSMUST00000087867 2304 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Akna-201ENSMUST00000035724 5387 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Cdx2P43241 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Myo3b-202ENSMUST00000112241 1319 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Tsku-205ENSMUST00000167405 2597 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Cdx2P43241 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC11.54□□□□□ -0.56
Cdx2P43241 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Fam71f1-201ENSMUST00000090487 1584 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Dst-213ENSMUST00000183302 8788 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Prkaca-202ENSMUST00000211558 1399 ntTSL 5 BASIC11.54□□□□□ -0.56
Cdx2P43241 Cdadc1-203ENSMUST00000167100 2243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Cdx2P43241 Rab10os-202ENSMUST00000177896 2872 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Osbp2-202ENSMUST00000101632 2697 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Cdx2P43241 Ednrb-203ENSMUST00000227824 2669 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Cdx2P43241 Chrna9-201ENSMUST00000031108 1843 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Hist2h4-201ENSMUST00000171473 1630 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Cdx2P43241 Gm6198-201ENSMUST00000191337 2929 ntBASIC11.53□□□□□ -0.56
Cdx2P43241 Gm37513-201ENSMUST00000194830 2268 ntBASIC11.53□□□□□ -0.56
Cdx2P43241 Gm38378-201ENSMUST00000195153 2268 ntBASIC11.53□□□□□ -0.56
Cdx2P43241 Rab11fip1-202ENSMUST00000054212 7965 ntAPPRIS P3 TSL 5 BASIC11.53□□□□□ -0.56
Cdx2P43241 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Cdx2P43241 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Gpr107-201ENSMUST00000056433 6134 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 AC154747.3-201ENSMUST00000224471 3470 ntBASIC11.53□□□□□ -0.56
Cdx2P43241 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Ptp4a3-204ENSMUST00000167582 2640 ntTSL 5 BASIC11.53□□□□□ -0.56
Cdx2P43241 Zc3h6-202ENSMUST00000110320 4916 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
Cdx2P43241 Rhox9-202ENSMUST00000170643 2422 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Serf2-202ENSMUST00000110615 876 ntTSL 2 BASIC11.53□□□□□ -0.56
Cdx2P43241 Bri3-202ENSMUST00000110695 669 ntTSL 2 BASIC11.53□□□□□ -0.56
Cdx2P43241 2900011O08Rik-202ENSMUST00000118412 954 ntTSL 3 BASIC11.53□□□□□ -0.56
Cdx2P43241 Gm11340-201ENSMUST00000119226 412 ntBASIC11.53□□□□□ -0.56
Cdx2P43241 Mrps17-204ENSMUST00000119604 1208 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Gm13328-201ENSMUST00000120816 1020 ntBASIC11.53□□□□□ -0.56
Cdx2P43241 9430091E24Rik-201ENSMUST00000127301 1067 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Cdx2P43241 Plgrkt-209ENSMUST00000152936 604 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms