Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm43962-201ENSMUST00000203898 190 ntBASIC14.13□□□□□ -0.15
Traf1P39428 Zfp706-203ENSMUST00000226453 517 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Traf1P39428 Ankrd2-201ENSMUST00000026172 1100 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Traf1P39428 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Traf1P39428 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Traf1P39428 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Traf1P39428 Ahdc1-201ENSMUST00000044521 6105 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Traf1P39428 Gm18263-201ENSMUST00000220846 1928 ntBASIC14.13□□□□□ -0.15
Traf1P39428 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
Traf1P39428 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Traf1P39428 Usp53-202ENSMUST00000197314 3586 ntTSL 5 BASIC14.13□□□□□ -0.15
Traf1P39428 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Traf1P39428 Gm44942-201ENSMUST00000096093 2072 ntBASIC14.13□□□□□ -0.15
Traf1P39428 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Traf1P39428 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Traf1P39428 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Traf1P39428 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Traf1P39428 Dcaf7-201ENSMUST00000058438 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Traf1P39428 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC14.12□□□□□ -0.15
Traf1P39428 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC14.12□□□□□ -0.15
Traf1P39428 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Traf1P39428 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Traf1P39428 Acin1-208ENSMUST00000126166 2369 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Traf1P39428 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Traf1P39428 Gramd2-201ENSMUST00000098661 1368 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Traf1P39428 Nudt18-202ENSMUST00000228554 3619 ntBASIC14.12□□□□□ -0.15
Traf1P39428 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Traf1P39428 Cog1-201ENSMUST00000018805 3935 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Traf1P39428 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Traf1P39428 Rph3al-201ENSMUST00000021208 1690 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Traf1P39428 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Traf1P39428 Gm27552-201ENSMUST00000183351 62 ntBASIC14.12□□□□□ -0.15
Traf1P39428 Gm27844-201ENSMUST00000183613 62 ntBASIC14.12□□□□□ -0.15
Traf1P39428 Gm7003-201ENSMUST00000195089 312 ntBASIC14.12□□□□□ -0.15
Traf1P39428 Gm18711-201ENSMUST00000199341 750 ntBASIC14.12□□□□□ -0.15
Traf1P39428 Gm34728-201ENSMUST00000201510 414 ntTSL 3 BASIC14.12□□□□□ -0.15
Traf1P39428 Mob2-203ENSMUST00000209732 977 ntAPPRIS ALT2 TSL 3 BASIC14.12□□□□□ -0.15
Traf1P39428 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC14.12□□□□□ -0.15
Traf1P39428 Aaas-201ENSMUST00000041208 1816 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Traf1P39428 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Traf1P39428 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Traf1P39428 Gm5847-201ENSMUST00000178959 1595 ntBASIC14.12□□□□□ -0.15
Traf1P39428 4930550L24Rik-201ENSMUST00000062542 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Traf1P39428 Trmt1-203ENSMUST00000109767 2138 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Traf1P39428 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC14.12□□□□□ -0.15
Traf1P39428 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC14.12□□□□□ -0.15
Traf1P39428 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Traf1P39428 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Traf1P39428 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Traf1P39428 Ephb3-201ENSMUST00000006112 4185 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Traf1P39428 Slc2a4-203ENSMUST00000141837 1776 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Traf1P39428 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Gm18782-201ENSMUST00000209023 1399 ntBASIC14.11□□□□□ -0.15
Traf1P39428 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Cyth1-201ENSMUST00000017276 3135 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC14.11□□□□□ -0.15
Traf1P39428 Wdr18-201ENSMUST00000045247 3911 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Kif13b-201ENSMUST00000100473 5603 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
Traf1P39428 Gm23200-201ENSMUST00000104379 132 ntBASIC14.11□□□□□ -0.15
Traf1P39428 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
Traf1P39428 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC14.11□□□□□ -0.15
Traf1P39428 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC14.11□□□□□ -0.15
Traf1P39428 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Cep97-206ENSMUST00000122280 1057 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Plekhd1-201ENSMUST00000140770 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC14.11□□□□□ -0.15
Traf1P39428 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Traf1P39428 Mir6979-201ENSMUST00000183927 56 ntBASIC14.11□□□□□ -0.15
Traf1P39428 Gm37986-201ENSMUST00000193285 383 ntBASIC14.11□□□□□ -0.15
Traf1P39428 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC14.11□□□□□ -0.15
Traf1P39428 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
Traf1P39428 Trpm1-219ENSMUST00000206314 2323 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Dhrs4-202ENSMUST00000226168 828 ntBASIC14.11□□□□□ -0.15
Traf1P39428 Ndufaf5-201ENSMUST00000044825 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Ccndbp1-201ENSMUST00000060455 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Lynx1-201ENSMUST00000023259 4023 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC14.11□□□□□ -0.15
Traf1P39428 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC14.11□□□□□ -0.15
Traf1P39428 Eif4enif1-213ENSMUST00000179770 3676 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Traf1P39428 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
Traf1P39428 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Traf1P39428 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms