Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col2a1P28481 Pcdha1-201ENSMUST00000070797 5248 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col2a1P28481 Fam19a2-201ENSMUST00000050756 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col2a1P28481 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col2a1P28481 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Col2a1P28481 9330182L06Rik-201ENSMUST00000069538 4688 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col2a1P28481 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col2a1P28481 Acsf3-202ENSMUST00000212781 2604 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
Col2a1P28481 Rp2-202ENSMUST00000115387 4498 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col2a1P28481 Dennd2d-201ENSMUST00000029508 4050 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col2a1P28481 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col2a1P28481 Psd2-206ENSMUST00000177432 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col2a1P28481 Ttyh1-202ENSMUST00000079415 2882 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Col2a1P28481 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Col2a1P28481 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC13.63□□□□□ -0.23
Col2a1P28481 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 Socs5-201ENSMUST00000041369 4392 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 Mfrp-205ENSMUST00000206308 4037 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Col2a1P28481 AC093022.4-203ENSMUST00000228523 2657 ntBASIC13.63□□□□□ -0.23
Col2a1P28481 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Col2a1P28481 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 Mrps17-204ENSMUST00000119604 1208 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 Gm11244-201ENSMUST00000121243 237 ntBASIC13.63□□□□□ -0.23
Col2a1P28481 Mir1901-201ENSMUST00000122616 78 ntBASIC13.63□□□□□ -0.23
Col2a1P28481 Dnmt3bos-201ENSMUST00000124988 718 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC13.63□□□□□ -0.23
Col2a1P28481 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
Col2a1P28481 Gm18159-201ENSMUST00000174516 1070 ntBASIC13.63□□□□□ -0.23
Col2a1P28481 Gm7593-201ENSMUST00000187246 644 ntBASIC13.63□□□□□ -0.23
Col2a1P28481 Gm37981-201ENSMUST00000194280 535 ntBASIC13.63□□□□□ -0.23
Col2a1P28481 Gm38314-201ENSMUST00000195709 625 ntBASIC13.63□□□□□ -0.23
Col2a1P28481 Gm35549-202ENSMUST00000203656 1009 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Col2a1P28481 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 Gm36970-201ENSMUST00000193688 1859 ntBASIC13.63□□□□□ -0.23
Col2a1P28481 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
Col2a1P28481 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 Galnt4-201ENSMUST00000161240 5089 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Col2a1P28481 Phactr3-203ENSMUST00000108915 2694 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC13.63□□□□□ -0.23
Col2a1P28481 Entpd5-203ENSMUST00000110272 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 Arhgap1-204ENSMUST00000111331 2883 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Col2a1P28481 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Col2a1P28481 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 Gm39377-201ENSMUST00000214587 2533 ntTSL 5 BASIC13.63□□□□□ -0.23
Col2a1P28481 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 2810474O19Rik-202ENSMUST00000100765 5356 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Col2a1P28481 Sacs-202ENSMUST00000119509 3468 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Col2a1P28481 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Col2a1P28481 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Dnaaf2-201ENSMUST00000021356 3390 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Gm9089-201ENSMUST00000122027 526 ntBASIC13.62□□□□□ -0.23
Col2a1P28481 Plac9a-202ENSMUST00000183431 536 ntTSL 3 BASIC13.62□□□□□ -0.23
Col2a1P28481 Plac9b-204ENSMUST00000184675 536 ntTSL 3 BASIC13.62□□□□□ -0.23
Col2a1P28481 Gm27910-201ENSMUST00000185004 107 ntBASIC13.62□□□□□ -0.23
Col2a1P28481 Ly6e-203ENSMUST00000185861 838 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
Col2a1P28481 Gm37406-201ENSMUST00000192478 500 ntTSL 3 BASIC13.62□□□□□ -0.23
Col2a1P28481 6430531B16Rik-204ENSMUST00000209335 898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC13.62□□□□□ -0.23
Col2a1P28481 Cmbl-201ENSMUST00000070918 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Kdm3a-214ENSMUST00000207023 4753 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Col2a1P28481 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Col2a1P28481 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 4930520O04Rik-202ENSMUST00000131898 2660 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Gm26616-202ENSMUST00000195676 3107 ntBASIC13.62□□□□□ -0.23
Col2a1P28481 Ppp1r13l-201ENSMUST00000047621 3130 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Gpat3-201ENSMUST00000031255 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Kcnf1-201ENSMUST00000170580 4789 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
Col2a1P28481 Chrdl1-204ENSMUST00000166406 2605 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Rsrc1-206ENSMUST00000162036 1406 ntAPPRIS P2 TSL 5 BASIC13.62□□□□□ -0.23
Col2a1P28481 AC108858.2-201ENSMUST00000228186 1425 ntBASIC13.62□□□□□ -0.23
Col2a1P28481 Cgn-201ENSMUST00000107272 4963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Abhd14b-207ENSMUST00000213179 1627 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
Col2a1P28481 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Gm10785-201ENSMUST00000156242 1583 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Wdr92-201ENSMUST00000046955 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Gm45428-201ENSMUST00000209619 1789 ntBASIC13.62□□□□□ -0.23
Col2a1P28481 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col2a1P28481 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Col2a1P28481 Rtn2-202ENSMUST00000108468 1076 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col2a1P28481 Avpr2-203ENSMUST00000114395 936 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms