Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Tnpo3-201ENSMUST00000012679 4251 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Sdc1P18828 Fam71f1-204ENSMUST00000166462 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Sdc1P18828 Mbtps2-203ENSMUST00000112522 3891 ntTSL 2 BASIC9.94□□□□□ -0.82
Sdc1P18828 Mbtps2-208ENSMUST00000179062 3890 ntAPPRIS P1 TSL 2 BASIC9.94□□□□□ -0.82
Sdc1P18828 Atp6v1a-201ENSMUST00000063661 3896 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Sdc1P18828 Birc7-201ENSMUST00000108875 1178 ntAPPRIS P1 TSL 5 BASIC9.94□□□□□ -0.82
Sdc1P18828 Rabepk-202ENSMUST00000113086 1106 ntTSL 5 BASIC9.94□□□□□ -0.82
Sdc1P18828 Rpl17-ps5-201ENSMUST00000121001 555 ntBASIC9.94□□□□□ -0.82
Sdc1P18828 Gm12539-201ENSMUST00000121549 1098 ntBASIC9.94□□□□□ -0.82
Sdc1P18828 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC9.94□□□□□ -0.82
Sdc1P18828 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Sdc1P18828 BC046401-201ENSMUST00000155786 847 ntTSL 3 BASIC9.94□□□□□ -0.82
Sdc1P18828 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Sdc1P18828 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Sdc1P18828 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Sdc1P18828 Gm10253-201ENSMUST00000194270 940 ntBASIC9.94□□□□□ -0.82
Sdc1P18828 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC9.94□□□□□ -0.82
Sdc1P18828 Hapln3-202ENSMUST00000205782 930 ntTSL 5 BASIC9.94□□□□□ -0.82
Sdc1P18828 Lce1d-201ENSMUST00000029524 678 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Sdc1P18828 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC9.94□□□□□ -0.82
Sdc1P18828 Rpl36-201ENSMUST00000080492 404 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Sdc1P18828 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC9.94□□□□□ -0.82
Sdc1P18828 Fgl2-201ENSMUST00000035799 3788 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Sdc1P18828 App-206ENSMUST00000227723 8167 ntAPPRIS ALT2 BASIC9.94□□□□□ -0.82
Sdc1P18828 Arfgap1-202ENSMUST00000108859 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC9.94□□□□□ -0.82
Sdc1P18828 Pla2g2f-201ENSMUST00000030526 2465 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Sdc1P18828 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC9.94□□□□□ -0.82
Sdc1P18828 LMLN2-201ENSMUST00000224691 2342 ntAPPRIS P5 BASIC9.94□□□□□ -0.82
Sdc1P18828 Gm45206-201ENSMUST00000206885 2285 ntBASIC9.94□□□□□ -0.82
Sdc1P18828 Thoc5-201ENSMUST00000038237 2235 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Sdc1P18828 Stkld1-201ENSMUST00000055406 2169 ntAPPRIS P1 TSL 1 (best) BASIC9.94□□□□□ -0.82
Sdc1P18828 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC9.94□□□□□ -0.82
Sdc1P18828 CT009713.10-201ENSMUST00000225013 1986 ntBASIC9.94□□□□□ -0.82
Sdc1P18828 Itgb2-201ENSMUST00000000299 2970 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Mlx-203ENSMUST00000107303 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Cep76-201ENSMUST00000097542 3979 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Med13l-201ENSMUST00000100816 9296 ntAPPRIS P3 TSL 2 BASIC9.93□□□□□ -0.82
Sdc1P18828 Cox15-201ENSMUST00000045562 4798 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Zranb2-201ENSMUST00000029831 2540 ntTSL 5 BASIC9.93□□□□□ -0.82
Sdc1P18828 Slc9a8-201ENSMUST00000047815 4521 ntAPPRIS P3 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Fam149a-201ENSMUST00000093526 5469 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 A530013C23Rik-202ENSMUST00000141923 3489 ntTSL 2 BASIC9.93□□□□□ -0.82
Sdc1P18828 Gm10803-201ENSMUST00000099692 2483 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Hsd17b7-202ENSMUST00000111353 1446 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 D130051D11Rik-201ENSMUST00000189171 6188 ntBASIC9.93□□□□□ -0.82
Sdc1P18828 C230024C17Rik-201ENSMUST00000190663 3337 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC9.93□□□□□ -0.82
Sdc1P18828 Rbm47-205ENSMUST00000167950 4895 ntAPPRIS P3 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Gm7538-201ENSMUST00000200918 1348 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Tm9sf1-202ENSMUST00000120041 2164 ntAPPRIS P1 TSL 5 BASIC9.93□□□□□ -0.82
Sdc1P18828 Gm14704-201ENSMUST00000120300 874 ntBASIC9.93□□□□□ -0.82
Sdc1P18828 Gm15693-201ENSMUST00000120470 637 ntBASIC9.93□□□□□ -0.82
Sdc1P18828 AC155937.1-201ENSMUST00000125635 831 ntAPPRIS P1 TSL 3 BASIC9.93□□□□□ -0.82
Sdc1P18828 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Gm15567-201ENSMUST00000148699 2130 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 U2af1l4-215ENSMUST00000166257 546 ntTSL 5 BASIC9.93□□□□□ -0.82
Sdc1P18828 B230217C12Rik-204ENSMUST00000170806 1118 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Smad7-204ENSMUST00000174411 769 ntTSL 5 BASIC9.93□□□□□ -0.82
Sdc1P18828 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Gm43474-201ENSMUST00000196415 774 ntBASIC9.93□□□□□ -0.82
Sdc1P18828 C030018K13Rik-202ENSMUST00000196829 712 ntTSL 3 BASIC9.93□□□□□ -0.82
Sdc1P18828 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC9.93□□□□□ -0.82
Sdc1P18828 Gm44344-201ENSMUST00000200287 129 ntBASIC9.93□□□□□ -0.82
Sdc1P18828 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC9.93□□□□□ -0.82
Sdc1P18828 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Ccl24-201ENSMUST00000004936 1295 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Tescl-201ENSMUST00000069562 855 ntAPPRIS P1 BASIC9.93□□□□□ -0.82
Sdc1P18828 Gm24136-201ENSMUST00000083374 165 ntBASIC9.93□□□□□ -0.82
Sdc1P18828 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC9.93□□□□□ -0.82
Sdc1P18828 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Slc2a10-201ENSMUST00000029196 3544 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Acadl-201ENSMUST00000027153 1916 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Map4-206ENSMUST00000169851 3446 ntTSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Dhx34-201ENSMUST00000094816 4073 ntAPPRIS P2 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Man2b2-201ENSMUST00000031002 3330 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Pou2f1-202ENSMUST00000069609 2402 ntAPPRIS P3 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Arc-202ENSMUST00000110009 3054 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Arc-201ENSMUST00000023268 3055 ntAPPRIS P1 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 1300002E11Rik-202ENSMUST00000181780 1650 ntTSL 2 BASIC9.93□□□□□ -0.82
Sdc1P18828 Tle3-202ENSMUST00000159050 2304 ntTSL 5 BASIC9.93□□□□□ -0.82
Sdc1P18828 Acox3-203ENSMUST00000114237 2956 ntAPPRIS P2 TSL 1 (best) BASIC9.93□□□□□ -0.82
Sdc1P18828 Ikzf4-203ENSMUST00000221150 2213 ntTSL 1 (best) BASIC9.92□□□□□ -0.82
Sdc1P18828 Thbs2-201ENSMUST00000170872 5922 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Sdc1P18828 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Sdc1P18828 Pla2g4b-201ENSMUST00000126150 2790 ntAPPRIS P1 TSL 5 BASIC9.92□□□□□ -0.82
Sdc1P18828 Sirt2-208ENSMUST00000155327 2117 ntAPPRIS ALT2 TSL 5 BASIC9.92□□□□□ -0.82
Sdc1P18828 Btg2-201ENSMUST00000020692 2743 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Sdc1P18828 Ttc30b-201ENSMUST00000099996 2737 ntAPPRIS P1 BASIC9.92□□□□□ -0.82
Sdc1P18828 Ubtf-202ENSMUST00000079589 3286 ntAPPRIS P3 TSL 5 BASIC9.92□□□□□ -0.82
Sdc1P18828 Haus8-202ENSMUST00000110071 1452 ntAPPRIS P3 TSL 1 (best) BASIC9.92□□□□□ -0.82
Sdc1P18828 Dync1i2-201ENSMUST00000081710 2631 ntAPPRIS P3 TSL 1 (best) BASIC9.92□□□□□ -0.82
Sdc1P18828 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Sdc1P18828 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC9.92□□□□□ -0.82
Sdc1P18828 Slc6a5-202ENSMUST00000107605 2467 ntAPPRIS P1 TSL 1 (best) BASIC9.92□□□□□ -0.82
Retrieved 100 of 76,532 protein–RNA pairs in 64.9 ms